Protein–RNA interactions for Protein: P53671

LIMK2, LIM domain kinase 2, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK2P53671 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK2P53671 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK2P53671 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK2P53671 AL442647.2-201ENST00000429864 857 ntBASIC15.23■□□□□ 0.03
LIMK2P53671 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC15.23■□□□□ 0.03
LIMK2P53671 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC15.23■□□□□ 0.03
LIMK2P53671 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC15.23■□□□□ 0.03
LIMK2P53671 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK2P53671 AC004066.1-201ENST00000502488 802 ntBASIC15.23■□□□□ 0.03
LIMK2P53671 GAPDHP40-201ENST00000505218 1006 ntBASIC15.23■□□□□ 0.03
LIMK2P53671 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
LIMK2P53671 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.23■□□□□ 0.03
LIMK2P53671 PAM16-204ENST00000571941 674 ntTSL 3 BASIC15.23■□□□□ 0.03
LIMK2P53671 GPX4-206ENST00000588919 803 ntTSL 2 BASIC15.23■□□□□ 0.03
LIMK2P53671 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK2P53671 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.23■□□□□ 0.03
LIMK2P53671 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.23■□□□□ 0.03
LIMK2P53671 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK2P53671 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK2P53671 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK2P53671 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LIMK2P53671 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK2P53671 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.23■□□□□ 0.03
LIMK2P53671 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC15.23■□□□□ 0.03
LIMK2P53671 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.23■□□□□ 0.03
LIMK2P53671 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
LIMK2P53671 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK2P53671 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK2P53671 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
LIMK2P53671 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIMK2P53671 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LIMK2P53671 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.22■□□□□ 0.03
LIMK2P53671 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
LIMK2P53671 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC15.22■□□□□ 0.03
LIMK2P53671 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC15.22■□□□□ 0.03
LIMK2P53671 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
LIMK2P53671 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 PES1-204ENST00000402284 2144 ntTSL 5 BASIC15.22■□□□□ 0.03
LIMK2P53671 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.22■□□□□ 0.03
LIMK2P53671 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.22■□□□□ 0.03
LIMK2P53671 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
LIMK2P53671 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
LIMK2P53671 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
LIMK2P53671 MIR658-201ENST00000385210 100 ntBASIC15.22■□□□□ 0.03
LIMK2P53671 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.22■□□□□ 0.03
LIMK2P53671 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC15.22■□□□□ 0.03
LIMK2P53671 AC022210.1-201ENST00000449856 793 ntBASIC15.22■□□□□ 0.03
LIMK2P53671 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.22■□□□□ 0.03
LIMK2P53671 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC15.22■□□□□ 0.03
LIMK2P53671 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC15.22■□□□□ 0.03
LIMK2P53671 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC15.22■□□□□ 0.03
LIMK2P53671 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC15.22■□□□□ 0.03
LIMK2P53671 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC15.22■□□□□ 0.03
LIMK2P53671 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC15.22■□□□□ 0.03
LIMK2P53671 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC15.22■□□□□ 0.03
LIMK2P53671 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC15.22■□□□□ 0.03
LIMK2P53671 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC15.22■□□□□ 0.03
LIMK2P53671 AC008735.3-201ENST00000596646 500 ntBASIC15.22■□□□□ 0.03
LIMK2P53671 AC010319.3-201ENST00000597028 470 ntBASIC15.22■□□□□ 0.03
LIMK2P53671 AL512343.1-201ENST00000605837 169 ntBASIC15.22■□□□□ 0.03
LIMK2P53671 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.22■□□□□ 0.03
LIMK2P53671 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
LIMK2P53671 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
LIMK2P53671 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
LIMK2P53671 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 FES-203ENST00000394302 2133 ntTSL 5 BASIC15.22■□□□□ 0.03
LIMK2P53671 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.22■□□□□ 0.03
LIMK2P53671 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.22■□□□□ 0.03
LIMK2P53671 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.22■□□□□ 0.03
LIMK2P53671 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK2P53671 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC15.21■□□□□ 0.03
LIMK2P53671 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms