Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CTCFP49711 CLUHP2-201ENST00000426660 1303 ntBASIC17.35■□□□□ 0.37
CTCFP49711 KRT18P9-201ENST00000604826 1300 ntBASIC17.35■□□□□ 0.37
CTCFP49711 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CTCFP49711 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CTCFP49711 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CTCFP49711 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC17.35■□□□□ 0.37
CTCFP49711 STK26-204ENST00000481105 1835 ntTSL 2 BASIC17.35■□□□□ 0.37
CTCFP49711 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CTCFP49711 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
CTCFP49711 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CTCFP49711 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CTCFP49711 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
CTCFP49711 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.35■□□□□ 0.37
CTCFP49711 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CTCFP49711 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CTCFP49711 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CTCFP49711 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CTCFP49711 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CTCFP49711 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CTCFP49711 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CTCFP49711 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CTCFP49711 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC17.34■□□□□ 0.37
CTCFP49711 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.34■□□□□ 0.37
CTCFP49711 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CTCFP49711 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CTCFP49711 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC17.34■□□□□ 0.37
CTCFP49711 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC17.34■□□□□ 0.37
CTCFP49711 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC17.34■□□□□ 0.37
CTCFP49711 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CTCFP49711 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.34■□□□□ 0.37
CTCFP49711 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CTCFP49711 E2F3P2-201ENST00000447755 1422 ntBASIC17.34■□□□□ 0.37
CTCFP49711 DUTP3-201ENST00000450025 415 ntBASIC17.34■□□□□ 0.37
CTCFP49711 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CTCFP49711 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC17.34■□□□□ 0.37
CTCFP49711 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CTCFP49711 RN7SL846P-201ENST00000467429 292 ntBASIC17.34■□□□□ 0.37
CTCFP49711 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CTCFP49711 MESTP3-201ENST00000503460 968 ntBASIC17.34■□□□□ 0.37
CTCFP49711 RPS23-204ENST00000507980 836 ntTSL 2 BASIC17.34■□□□□ 0.37
CTCFP49711 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC17.34■□□□□ 0.37
CTCFP49711 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CTCFP49711 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CTCFP49711 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC17.34■□□□□ 0.37
CTCFP49711 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CTCFP49711 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC17.34■□□□□ 0.37
CTCFP49711 AC134407.2-201ENST00000625089 1978 ntBASIC17.34■□□□□ 0.37
CTCFP49711 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CTCFP49711 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CTCFP49711 TSPY26P-202ENST00000565928 3884 ntBASIC17.34■□□□□ 0.37
CTCFP49711 MYB-201ENST00000316528 3571 ntTSL 5 BASIC17.34■□□□□ 0.37
CTCFP49711 MYB-241ENST00000616088 3573 ntTSL 5 BASIC17.34■□□□□ 0.37
CTCFP49711 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CTCFP49711 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.34■□□□□ 0.37
CTCFP49711 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
CTCFP49711 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CTCFP49711 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC17.33■□□□□ 0.37
CTCFP49711 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
CTCFP49711 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CTCFP49711 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CTCFP49711 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
CTCFP49711 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CTCFP49711 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CTCFP49711 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC17.33■□□□□ 0.37
CTCFP49711 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CTCFP49711 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CTCFP49711 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CTCFP49711 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC17.33■□□□□ 0.37
CTCFP49711 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CTCFP49711 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CTCFP49711 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC17.33■□□□□ 0.36
CTCFP49711 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CTCFP49711 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CTCFP49711 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CTCFP49711 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC17.33■□□□□ 0.36
CTCFP49711 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC17.33■□□□□ 0.36
CTCFP49711 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC17.33■□□□□ 0.36
CTCFP49711 AC083801.1-201ENST00000491689 358 ntBASIC17.33■□□□□ 0.36
CTCFP49711 ORAOV1P1-201ENST00000503108 395 ntBASIC17.33■□□□□ 0.36
CTCFP49711 CISD2-202ENST00000503643 808 ntTSL 2 BASIC17.33■□□□□ 0.36
CTCFP49711 MRPL22P1-201ENST00000505398 616 ntBASIC17.33■□□□□ 0.36
CTCFP49711 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC17.33■□□□□ 0.36
CTCFP49711 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC17.33■□□□□ 0.36
CTCFP49711 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC17.33■□□□□ 0.36
CTCFP49711 RPS5-204ENST00000598098 536 ntTSL 2 BASIC17.33■□□□□ 0.36
CTCFP49711 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CTCFP49711 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.33■□□□□ 0.36
CTCFP49711 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CTCFP49711 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CTCFP49711 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CTCFP49711 MBLAC2-202ENST00000514906 1936 ntBASIC17.33■□□□□ 0.36
CTCFP49711 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CTCFP49711 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
CTCFP49711 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC17.33■□□□□ 0.36
CTCFP49711 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CTCFP49711 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CTCFP49711 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.36
CTCFP49711 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
CTCFP49711 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms