Protein–RNA interactions for Protein: P35523

CLCN1, Chloride channel protein 1, humanhuman

Predictions only

Length 988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN1P35523 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN1P35523 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN1P35523 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CLCN1P35523 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN1P35523 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN1P35523 AOC1-204ENST00000467291 2857 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CLCN1P35523 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC17.25■□□□□ 0.35
CLCN1P35523 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN1P35523 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN1P35523 SRC-202ENST00000373558 4304 ntTSL 5 BASIC17.25■□□□□ 0.35
CLCN1P35523 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN1P35523 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN1P35523 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC17.24■□□□□ 0.35
CLCN1P35523 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC17.24■□□□□ 0.35
CLCN1P35523 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CLCN1P35523 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN1P35523 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN1P35523 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC17.24■□□□□ 0.35
CLCN1P35523 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC17.24■□□□□ 0.35
CLCN1P35523 AP3S2-216ENST00000617003 1561 ntBASIC17.24■□□□□ 0.35
CLCN1P35523 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC17.24■□□□□ 0.35
CLCN1P35523 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN1P35523 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN1P35523 AL691432.1-201ENST00000596308 1422 ntBASIC17.24■□□□□ 0.35
CLCN1P35523 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CLCN1P35523 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN1P35523 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN1P35523 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN1P35523 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC17.24■□□□□ 0.35
CLCN1P35523 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN1P35523 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN1P35523 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.24■□□□□ 0.35
CLCN1P35523 RPSAP43-201ENST00000402237 625 ntBASIC17.24■□□□□ 0.35
CLCN1P35523 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.24■□□□□ 0.35
CLCN1P35523 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.24■□□□□ 0.35
CLCN1P35523 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.24■□□□□ 0.35
CLCN1P35523 RNA5SP410-201ENST00000516285 106 ntBASIC17.24■□□□□ 0.35
CLCN1P35523 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC17.24■□□□□ 0.35
CLCN1P35523 PAM16-215ENST00000577031 548 ntTSL 4 BASIC17.24■□□□□ 0.35
CLCN1P35523 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.24■□□□□ 0.35
CLCN1P35523 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC17.24■□□□□ 0.35
CLCN1P35523 MYRIP-204ENST00000444716 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN1P35523 UXT-AS1-201ENST00000590504 1525 ntBASIC17.24■□□□□ 0.35
CLCN1P35523 HOXA7-201ENST00000242159 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN1P35523 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN1P35523 DKFZP434A062-201ENST00000573103 5021 ntBASIC17.24■□□□□ 0.35
CLCN1P35523 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN1P35523 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC17.24■□□□□ 0.35
CLCN1P35523 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CLCN1P35523 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC17.24■□□□□ 0.35
CLCN1P35523 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN1P35523 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN1P35523 MSH2-201ENST00000233146 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN1P35523 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN1P35523 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN1P35523 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
CLCN1P35523 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN1P35523 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
CLCN1P35523 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN1P35523 TP73-207ENST00000378290 1831 ntTSL 2 BASIC17.24■□□□□ 0.35
CLCN1P35523 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC17.24■□□□□ 0.35
CLCN1P35523 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN1P35523 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CLCN1P35523 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC17.23■□□□□ 0.35
CLCN1P35523 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC17.23■□□□□ 0.35
CLCN1P35523 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN1P35523 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN1P35523 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CLCN1P35523 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CLCN1P35523 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN1P35523 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN1P35523 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC17.23■□□□□ 0.35
CLCN1P35523 FTO-214ENST00000636218 2227 ntTSL 5 BASIC17.23■□□□□ 0.35
CLCN1P35523 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC17.23■□□□□ 0.35
CLCN1P35523 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN1P35523 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN1P35523 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN1P35523 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.23■□□□□ 0.35
CLCN1P35523 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN1P35523 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN1P35523 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.23■□□□□ 0.35
CLCN1P35523 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CLCN1P35523 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC17.23■□□□□ 0.35
CLCN1P35523 AC093520.2-201ENST00000561830 333 ntBASIC17.23■□□□□ 0.35
CLCN1P35523 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.23■□□□□ 0.35
CLCN1P35523 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN1P35523 AC010327.4-202ENST00000591484 748 ntBASIC17.23■□□□□ 0.35
CLCN1P35523 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.23■□□□□ 0.35
CLCN1P35523 AL513210.1-201ENST00000629608 234 ntBASIC17.23■□□□□ 0.35
CLCN1P35523 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN1P35523 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CLCN1P35523 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN1P35523 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN1P35523 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC17.23■□□□□ 0.35
CLCN1P35523 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN1P35523 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN1P35523 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC17.23■□□□□ 0.35
CLCN1P35523 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
CLCN1P35523 PCDHB18P-202ENST00000526308 3197 ntBASIC17.23■□□□□ 0.35
CLCN1P35523 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms