Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC26.09■■□□□ 1.775e-14■□□□□ 9.6
YBX3P16989 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.685e-14■□□□□ 9.6
YBX3P16989 CHCHD10-203ENST00000517886 494 ntTSL 325.56■■□□□ 1.685e-14■□□□□ 9.6
YBX3P16989 RPL22-201ENST00000234875 2078 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.523e-10■□□□□ 9.6
YBX3P16989 RPL22-207ENST00000484532 449 ntTSL 2 BASIC11.33□□□□□ -0.63e-10■□□□□ 9.6
YBX3P16989 DDX41-212ENST00000511040 721 ntTSL 318.18■□□□□ 0.52e-8■□□□□ 9.6
YBX3P16989 DDX41-216ENST00000513562 552 ntTSL 415.74■□□□□ 0.112e-8■□□□□ 9.6
YBX3P16989 GARS-206ENST00000478124 1877 ntTSL 522.24■■□□□ 1.155e-14■□□□□ 9.6
YBX3P16989 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.125e-14■□□□□ 9.6
YBX3P16989 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.091e-8■□□□□ 9.5
YBX3P16989 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.021e-8■□□□□ 9.5
YBX3P16989 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.051e-8■□□□□ 9.5
YBX3P16989 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.161e-8■□□□□ 9.5
YBX3P16989 MAP3K4-215ENST00000544041 5444 ntTSL 1 (best)13.88□□□□□ -0.191e-8■□□□□ 9.5
YBX3P16989 MAP3K4-207ENST00000490904 5451 ntTSL 1 (best)13.79□□□□□ -0.21e-8■□□□□ 9.5
YBX3P16989 ZNF217-203ENST00000431687 779 ntTSL 510.01□□□□□ -0.816e-8■□□□□ 9.5
YBX3P16989 PKP4-205ENST00000426248 4134 ntTSL 1 (best)17.29■□□□□ 0.362e-7■□□□□ 9.5
YBX3P16989 PKP4-201ENST00000389757 5777 ntAPPRIS ALT1 TSL 1 (best) BASIC10.59□□□□□ -0.712e-7■□□□□ 9.5
YBX3P16989 PKP4-202ENST00000389759 4443 ntAPPRIS P4 TSL 1 (best) BASIC8.77□□□□□ -12e-7■□□□□ 9.5
YBX3P16989 PKP4-217ENST00000628904 3856 ntTSL 5 BASIC8□□□□□ -1.132e-7■□□□□ 9.5
YBX3P16989 TPM4-207ENST00000588032 712 ntTSL 313.04□□□□□ -0.327e-9■□□□□ 9.5
YBX3P16989 TPM4-213ENST00000591226 2672 nt12.39□□□□□ -0.437e-9■□□□□ 9.5
YBX3P16989 COX7A2-208ENST00000509698 480 ntAPPRIS ALT2 TSL 3 BASIC14.28□□□□□ -0.121e-9■□□□□ 9.5
YBX3P16989 COX7A2-202ENST00000370089 773 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.441e-9■□□□□ 9.5
YBX3P16989 COX7A2-201ENST00000370081 914 ntAPPRIS P2 TSL 3 BASIC11.51□□□□□ -0.571e-9■□□□□ 9.5
YBX3P16989 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC6.08□□□□□ -1.441e-9■□□□□ 9.5
YBX3P16989 COX7A2-204ENST00000459637 501 ntTSL 25.02□□□□□ -1.611e-9■□□□□ 9.5
YBX3P16989 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC2.77□□□□□ -1.971e-9■□□□□ 9.5
YBX3P16989 COX7A2L-207ENST00000482463 1918 ntTSL 212.4□□□□□ -0.423e-7■□□□□ 9.5
YBX3P16989 AHCY-203ENST00000473516 488 ntTSL 317.08■□□□□ 0.322e-13■□□□□ 9.5
YBX3P16989 SAT1-203ENST00000379254 868 ntTSL 3 BASIC17.8■□□□□ 0.442e-11■□□□□ 9.5
YBX3P16989 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.442e-11■□□□□ 9.5
YBX3P16989 SAT1-209ENST00000489394 1135 ntTSL 215□□□□□ -0.012e-11■□□□□ 9.5
YBX3P16989 SAT1-206ENST00000463236 735 ntTSL 37.76□□□□□ -1.172e-11■□□□□ 9.5
YBX3P16989 SRP68-207ENST00000588643 2040 ntTSL 211.69□□□□□ -0.542e-6■□□□□ 9.5
YBX3P16989 HEXA-213ENST00000568777 6909 ntTSL 58.15□□□□□ -1.13e-6■□□□□ 9.5
YBX3P16989 LGALS1-203ENST00000454173 331 ntTSL 521.43■■□□□ 1.028e-11■□□□□ 9.5
YBX3P16989 RPL15-203ENST00000412097 562 ntTSL 515.08■□□□□ 03e-15■□□□□ 9.5
YBX3P16989 PTBP1-209ENST00000586481 578 ntTSL 326.3■■□□□ 1.89e-13■□□□□ 9.5
YBX3P16989 PTBP1-216ENST00000590887 642 ntTSL 315.18■□□□□ 0.029e-13■□□□□ 9.5
YBX3P16989 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.097e-9■□□□□ 9.5
YBX3P16989 ANXA11-210ENST00000481805 793 ntTSL 228.73■■■□□ 2.192e-9■□□□□ 9.5
YBX3P16989 RPL15-202ENST00000354811 820 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.163e-15■□□□□ 9.5
YBX3P16989 RPL15-209ENST00000436146 1990 ntTSL 58.79□□□□□ -13e-15■□□□□ 9.5
YBX3P16989 NIPBL-205ENST00000505998 969 ntTSL 57.94□□□□□ -1.142e-16■□□□□ 9.5
YBX3P16989 ORC4-204ENST00000440042 552 ntTSL 325.82■■□□□ 1.725e-6■□□□□ 9.5
YBX3P16989 ORC4-211ENST00000490200 563 ntTSL 425.62■■□□□ 1.695e-6■□□□□ 9.5
YBX3P16989 ORC4-206ENST00000461711 528 ntTSL 423.73■■□□□ 1.395e-6■□□□□ 9.5
YBX3P16989 CDCA5-208ENST00000529290 789 ntTSL 522.46■■□□□ 1.195e-6■□□□□ 9.5
YBX3P16989 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.525e-6■□□□□ 9.5
YBX3P16989 ORC4-205ENST00000457954 647 ntTSL 415.69■□□□□ 0.15e-6■□□□□ 9.5
YBX3P16989 CDCA5-210ENST00000533015 563 ntTSL 215.55■□□□□ 0.085e-6■□□□□ 9.5
YBX3P16989 ORC4-212ENST00000495601 611 ntTSL 213.83□□□□□ -0.25e-6■□□□□ 9.5
YBX3P16989 CDCA5-206ENST00000525464 672 ntTSL 513.17□□□□□ -0.35e-6■□□□□ 9.5
YBX3P16989 SND1-205ENST00000467238 716 ntTSL 39.58□□□□□ -0.884e-12■□□□□ 9.5
YBX3P16989 ORC4-203ENST00000416719 571 ntTSL 37.02□□□□□ -1.295e-6■□□□□ 9.5
YBX3P16989 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.45e-6■□□□□ 9.5
YBX3P16989 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC6.28□□□□□ -1.45e-6■□□□□ 9.5
YBX3P16989 ORC4-213ENST00000496670 645 ntTSL 55.17□□□□□ -1.585e-6■□□□□ 9.5
YBX3P16989 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.625e-6■□□□□ 9.5
YBX3P16989 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.69□□□□□ -1.665e-6■□□□□ 9.5
YBX3P16989 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.725e-6■□□□□ 9.5
YBX3P16989 CDT1-203ENST00000569140 571 ntTSL 316.39■□□□□ 0.214e-10■□□□□ 9.5
YBX3P16989 GINS2-203ENST00000596233 537 ntTSL 315.43■□□□□ 0.062e-6■□□□□ 9.5
YBX3P16989 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.746e-8■□□□□ 9.5
YBX3P16989 PXN-214ENST00000547983 1004 ntTSL 525.43■■□□□ 1.666e-7■□□□□ 9.5
YBX3P16989 RAE1-202ENST00000395840 2602 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.735e-6■□□□□ 9.5
YBX3P16989 NUP210-203ENST00000479519 1312 ntTSL 1 (best)18.22■□□□□ 0.511e-8■□□□□ 9.5
YBX3P16989 MTHFD1-210ENST00000555252 2053 ntTSL 1 (best)10.91□□□□□ -0.662e-7■□□□□ 9.5
YBX3P16989 MTHFD1-201ENST00000216605 3136 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.852e-7■□□□□ 9.5
YBX3P16989 MTHFD1-202ENST00000545908 6814 ntTSL 2 BASIC9.31□□□□□ -0.922e-7■□□□□ 9.5
YBX3P16989 CSNK1A1-206ENST00000515748 620 ntTSL 2 BASIC13.56□□□□□ -0.243e-8■□□□□ 9.5
YBX3P16989 AHCY-202ENST00000468908 675 ntTSL 516.24■□□□□ 0.191e-10■□□□□ 9.5
YBX3P16989 COX7C-204ENST00000510447 581 ntTSL 314.02□□□□□ -0.176e-11■□□□□ 9.5
YBX3P16989 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC19.26■□□□□ 0.671e-6■□□□□ 9.5
YBX3P16989 VAMP8-201ENST00000263864 774 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.081e-6■□□□□ 9.5
YBX3P16989 VAMP8-202ENST00000409760 805 ntTSL 3 BASIC12.96□□□□□ -0.331e-6■□□□□ 9.5
YBX3P16989 EIF2S3-201ENST00000253039 2858 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.192e-16■□□□□ 9.5
YBX3P16989 EIF2S3-205ENST00000487075 367 ntTSL 56.92□□□□□ -1.32e-16■□□□□ 9.5
YBX3P16989 EIF2S3-202ENST00000423068 773 ntTSL 26.04□□□□□ -1.442e-16■□□□□ 9.5
YBX3P16989 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC19.26■□□□□ 0.676e-7■□□□□ 9.5
YBX3P16989 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC18.47■□□□□ 0.556e-7■□□□□ 9.5
YBX3P16989 AP1M1-203ENST00000444449 2311 ntTSL 1 (best) BASIC13.69□□□□□ -0.226e-7■□□□□ 9.5
YBX3P16989 AP1M1-201ENST00000291439 13193 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.246e-7■□□□□ 9.5
YBX3P16989 BUB1-211ENST00000490632 755 ntTSL 212.33□□□□□ -0.446e-12■□□□□ 9.5
YBX3P16989 HBS1L-204ENST00000367826 2703 ntTSL 2 BASIC10.35□□□□□ -0.753e-8■□□□□ 9.5
YBX3P16989 HBS1L-211ENST00000527507 629 ntTSL 410.27□□□□□ -0.773e-8■□□□□ 9.5
YBX3P16989 HBS1L-214ENST00000529641 881 ntTSL 59.6□□□□□ -0.873e-8■□□□□ 9.5
YBX3P16989 HBS1L-205ENST00000367837 7163 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.013e-8■□□□□ 9.5
YBX3P16989 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC8.26□□□□□ -1.093e-8■□□□□ 9.5
YBX3P16989 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC7.52□□□□□ -1.213e-8■□□□□ 9.5
YBX3P16989 HBS1L-216ENST00000533274 2102 ntTSL 27.03□□□□□ -1.283e-8■□□□□ 9.5
YBX3P16989 HBS1L-209ENST00000526100 1600 ntTSL 26.17□□□□□ -1.423e-8■□□□□ 9.5
YBX3P16989 RPS27A-210ENST00000495843 1159 ntTSL 59.89□□□□□ -0.836e-12■□□□□ 9.5
YBX3P16989 LGALS1-204ENST00000464120 303 ntTSL 218.8■□□□□ 0.61e-10■□□□□ 9.5
YBX3P16989 LGALS1-206ENST00000480207 185 ntTSL 511.14□□□□□ -0.631e-10■□□□□ 9.5
YBX3P16989 PSMB4-205ENST00000493673 1650 ntTSL 520.43■□□□□ 0.866e-7■□□□□ 9.5
YBX3P16989 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.66e-7■□□□□ 9.5
YBX3P16989 PSMB4-204ENST00000476467 2067 ntTSL 216.1■□□□□ 0.176e-7■□□□□ 9.5
YBX3P16989 TXNL4A-207ENST00000586825 586 ntTSL 336.18■■■■□ 3.384e-8■□□□□ 9.5
Retrieved 100 of 29,075 protein–RNA pairs in 137.3 ms