RNA–Protein interactions for RNA: ENST00000467238.1

SND1-205, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 3

Gene SND1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-205ENST00000467238 AEBP2Q6ZN18 517 aaPredicted RBP27.04■■□□□ 1.92
SND1-205ENST00000467238 CHIC1Q5VXU3 224 aa25.08■■□□□ 1.61
SND1-205ENST00000467238 SENP3Q9H4L4 574 aaPredicted RBP23■■□□□ 1.27
SND1-205ENST00000467238 PHF23Q9BUL5 403 aaPredicted RBP22.67■■□□□ 1.22
SND1-205ENST00000467238 FOXD1Q16676 465 aa21.62■■□□□ 1.05
SND1-205ENST00000467238 POTEDQ86YR6 584 aa21.02■□□□□ 0.96
SND1-205ENST00000467238 MSH5O43196 834 aa20.34■□□□□ 0.85
SND1-205ENST00000467238 PIAS4Q8N2W9 510 aaPredicted RBP19.98■□□□□ 0.79
SND1-205ENST00000467238 PPP6R1Q9UPN7 881 aa19.79■□□□□ 0.76
SND1-205ENST00000467238 ADRA2BP18089 450 aa19.65■□□□□ 0.74
SND1-205ENST00000467238 PLPPR3Q6T4P5 718 aa19.61■□□□□ 0.73
SND1-205ENST00000467238 MAPK8IP2Q13387 824 aaPredicted RBP18.27■□□□□ 0.52
SND1-205ENST00000467238 DMRT2Q9Y5R5 561 aa18.18■□□□□ 0.5
SND1-205ENST00000467238 CACNB1Q02641 598 aaPredicted RBP17.86■□□□□ 0.45
SND1-205ENST00000467238 SCAF1Q9H7N4 1312 aaKnown RBP17.8■□□□□ 0.44
SND1-205ENST00000467238 NISCHQ9Y2I1 1504 aa17.65■□□□□ 0.42
SND1-205ENST00000467238 DCAF8L1A6NGE4 600 aa17.43■□□□□ 0.38
SND1-205ENST00000467238 RNF39Q9H2S5 420 aa17.39■□□□□ 0.37
SND1-205ENST00000467238 HOXD11P31277 338 aaPredicted RBP17.28■□□□□ 0.36
SND1-205ENST00000467238 PPP4R3CPQ6ZMV5 832 aa17.15■□□□□ 0.34
SND1-205ENST00000467238 C1QBPQ07021 282 aaKnown RBP17.02■□□□□ 0.32
SND1-205ENST00000467238 RNF216Q9NWF9 866 aaPredicted RBP16.95■□□□□ 0.3
SND1-205ENST00000467238 CNKSR2Q8WXI2 1034 aa16.93■□□□□ 0.3
SND1-205ENST00000467238 DNAJC5BQ9UF47 199 aa16.74■□□□□ 0.27
SND1-205ENST00000467238 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.4■□□□□ 0.224e-7■□□□□ 8.7
SND1-205ENST00000467238 POTEHQ6S545 545 aa16.31■□□□□ 0.2
SND1-205ENST00000467238 NCBP3Q53F19 620 aaKnown RBP16.2■□□□□ 0.18
SND1-205ENST00000467238 NPM3O75607 178 aaKnown RBP16.1■□□□□ 0.17
SND1-205ENST00000467238 DSG3P32926 999 aa16.08■□□□□ 0.16
SND1-205ENST00000467238 U3KPZ7 1027 aaPredicted RBP16.08■□□□□ 0.16
SND1-205ENST00000467238 SPINK5Q9NQ38 1064 aaPredicted RBP16.05■□□□□ 0.16
SND1-205ENST00000467238 CAPN15O75808 1086 aa15.97■□□□□ 0.15
SND1-205ENST00000467238 CCDC180Q9P1Z9 1646 aa15.87■□□□□ 0.13
SND1-205ENST00000467238 ABCC9O60706 1549 aa15.73■□□□□ 0.11
SND1-205ENST00000467238 ABCB7O75027 752 aa15.6■□□□□ 0.09
SND1-205ENST00000467238 SLC4A2P04920 1241 aa15.59■□□□□ 0.09
SND1-205ENST00000467238 TRHP20396 242 aaPredicted RBP15.57■□□□□ 0.08
SND1-205ENST00000467238 ZNF219Q9P2Y4 722 aaPredicted RBP15.46■□□□□ 0.07
SND1-205ENST00000467238 APLP2Q06481 763 aa15.35■□□□□ 0.05
SND1-205ENST00000467238 KCNA4P22459 653 aa15.27■□□□□ 0.04
SND1-205ENST00000467238 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.24■□□□□ 0.03
SND1-205ENST00000467238 HNRNPUL2Q1KMD3 747 aaKnown RBP15.24■□□□□ 0.03
SND1-205ENST00000467238 CHRDL2Q6WN34 429 aa15.23■□□□□ 0.03
SND1-205ENST00000467238 RBM42Q9BTD8 480 aaKnown RBP15.22■□□□□ 0.03
SND1-205ENST00000467238 SAMD1Q6SPF0 538 aaPredicted RBP15.17■□□□□ 0.02
SND1-205ENST00000467238 RB1CC1Q8TDY2 1594 aa15.03■□□□□ -0
SND1-205ENST00000467238 POLA2Q14181 598 aa15.03■□□□□ -0
SND1-205ENST00000467238 SP7Q8TDD2 431 aaPredicted RBP14.99□□□□□ -0.01
SND1-205ENST00000467238 NACADO15069 1562 aa14.95□□□□□ -0.02
SND1-205ENST00000467238 MYCNP04198 464 aaPredicted RBP14.83□□□□□ -0.04
SND1-205ENST00000467238 UNC13AQ9UPW8 1703 aa14.8□□□□□ -0.04
SND1-205ENST00000467238 AKT1S1Q96B36 256 aa14.8□□□□□ -0.04
SND1-205ENST00000467238 DCAF8L2P0C7V8 631 aa14.78□□□□□ -0.04
SND1-205ENST00000467238 MYO15BQ96JP2 1530 aa14.77□□□□□ -0.04
SND1-205ENST00000467238 PIP4P2Q8N4L2 257 aa14.77□□□□□ -0.05
SND1-205ENST00000467238 REM2Q8IYK8 340 aaPredicted RBP14.71□□□□□ -0.05
SND1-205ENST00000467238 ATF5Q9Y2D1 282 aaPredicted RBP14.69□□□□□ -0.06
SND1-205ENST00000467238 ZCCHC6Q5VYS8 1495 aaKnown RBP14.65□□□□□ -0.06
SND1-205ENST00000467238 PABPN1Q86U42 306 aaKnown RBP eCLIP14.62□□□□□ -0.07
SND1-205ENST00000467238 BICRAQ9NZM4 1560 aa14.62□□□□□ -0.07
SND1-205ENST00000467238 HAX1O00165 279 aa14.61□□□□□ -0.07
SND1-205ENST00000467238 OSCARQ8IYS5 282 aa14.6□□□□□ -0.07
SND1-205ENST00000467238 DCAF1Q9Y4B6 1507 aa14.6□□□□□ -0.07
SND1-205ENST00000467238 PITPNM1O00562 1244 aa14.59□□□□□ -0.07
SND1-205ENST00000467238 FXR2P51116 673 aaKnown RBP eCLIP14.57□□□□□ -0.081e-18■■■■■ 37.9
SND1-205ENST00000467238 ZBTB12Q9Y330 459 aaPredicted RBP14.56□□□□□ -0.08
SND1-205ENST00000467238 EVX2Q03828 476 aa14.52□□□□□ -0.09
SND1-205ENST00000467238 SCRIBQ14160 1630 aa14.42□□□□□ -0.1
SND1-205ENST00000467238 SHROOM4Q9ULL8 1493 aa14.41□□□□□ -0.1
SND1-205ENST00000467238 FOXD4L1Q9NU39 408 aa14.36□□□□□ -0.11
SND1-205ENST00000467238 CC2D2AQ9P2K1 1620 aa14.26□□□□□ -0.13
SND1-205ENST00000467238 EIF4G1Q04637 1599 aaKnown RBP14.24□□□□□ -0.13
SND1-205ENST00000467238 SLC4A1APQ9BWU0 796 aaKnown RBP14.22□□□□□ -0.13
SND1-205ENST00000467238 CECR2Q9BXF3 1484 aa14.17□□□□□ -0.14
SND1-205ENST00000467238 PRKAR2AP13861 404 aaKnown RBP14.16□□□□□ -0.14
SND1-205ENST00000467238 C19orf67A6NJJ6 358 aa14.13□□□□□ -0.15
SND1-205ENST00000467238 SPDYE2BA6NHP3 402 aa14.12□□□□□ -0.15
SND1-205ENST00000467238 SPDYE6P0CI01 402 aa14.12□□□□□ -0.15
SND1-205ENST00000467238 SPDYE2Q495Y8 402 aa14.12□□□□□ -0.15
SND1-205ENST00000467238 ZBTB22O15209 634 aa14.1□□□□□ -0.15
SND1-205ENST00000467238 GABBR2O75899 941 aa14.07□□□□□ -0.16
SND1-205ENST00000467238 CLEC11AQ9Y240 323 aa14.05□□□□□ -0.16
SND1-205ENST00000467238 LHX8Q68G74 356 aa14.04□□□□□ -0.16
SND1-205ENST00000467238 SPDYE1Q8NFV5 336 aaPredicted RBP14.01□□□□□ -0.17
SND1-205ENST00000467238 FBLN2P98095 1184 aa13.96□□□□□ -0.17
SND1-205ENST00000467238 MKRN4PQ13434 485 aaPredicted RBP13.96□□□□□ -0.17
SND1-205ENST00000467238 ATXN8OSP0DMR3 200 aa13.95□□□□□ -0.18
SND1-205ENST00000467238 SSUH2Q9Y2M2 353 aa13.93□□□□□ -0.18
SND1-205ENST00000467238 CHADLQ6NUI6 762 aa13.92□□□□□ -0.18
SND1-205ENST00000467238 ZNF692Q9BU19 519 aaPredicted RBP13.86□□□□□ -0.19
SND1-205ENST00000467238 POTEIP0CG38 1075 aa13.85□□□□□ -0.19
SND1-205ENST00000467238 SMARCA4P51532 1647 aa13.79□□□□□ -0.2
SND1-205ENST00000467238 NCAPD3P42695 1498 aa13.78□□□□□ -0.2
SND1-205ENST00000467238 ATAD2BQ9ULI0 1458 aa13.74□□□□□ -0.21
SND1-205ENST00000467238 SMARCA2P51531 1590 aa13.73□□□□□ -0.21
SND1-205ENST00000467238 HMGXB3Q12766 1538 aa13.71□□□□□ -0.21
SND1-205ENST00000467238 PRR29P0C7W0 189 aa13.7□□□□□ -0.22
SND1-205ENST00000467238 BAZ1AQ9NRL2 1556 aaPredicted RBP13.7□□□□□ -0.22
SND1-205ENST00000467238 CD44P16070 742 aaKnown RBP13.67□□□□□ -0.22
SND1-205ENST00000467238 PEG3Q9GZU2 1588 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms