Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VIMP08670 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VIMP08670 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VIMP08670 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VIMP08670 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VIMP08670 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VIMP08670 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VIMP08670 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VIMP08670 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VIMP08670 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
VIMP08670 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
VIMP08670 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VIMP08670 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
VIMP08670 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
VIMP08670 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VIMP08670 KRT8P22-201ENST00000562317 1415 ntBASIC15.24■□□□□ 0.03
VIMP08670 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC15.24■□□□□ 0.03
VIMP08670 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VIMP08670 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VIMP08670 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC15.24■□□□□ 0.03
VIMP08670 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VIMP08670 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC15.24■□□□□ 0.03
VIMP08670 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.24■□□□□ 0.03
VIMP08670 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.24■□□□□ 0.03
VIMP08670 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VIMP08670 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC15.23■□□□□ 0.03
VIMP08670 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VIMP08670 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC15.23■□□□□ 0.03
VIMP08670 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VIMP08670 NUTM2HP-201ENST00000442076 2498 ntBASIC15.23■□□□□ 0.03
VIMP08670 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC15.23■□□□□ 0.03
VIMP08670 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
VIMP08670 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.23■□□□□ 0.03
VIMP08670 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
VIMP08670 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VIMP08670 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VIMP08670 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.23■□□□□ 0.03
VIMP08670 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VIMP08670 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VIMP08670 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC15.23■□□□□ 0.03
VIMP08670 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
VIMP08670 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VIMP08670 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VIMP08670 HNRNPDP1-201ENST00000439535 754 ntBASIC15.23■□□□□ 0.03
VIMP08670 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.23■□□□□ 0.03
VIMP08670 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VIMP08670 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
VIMP08670 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.23■□□□□ 0.03
VIMP08670 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.23■□□□□ 0.03
VIMP08670 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VIMP08670 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
VIMP08670 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.23■□□□□ 0.03
VIMP08670 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VIMP08670 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VIMP08670 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC15.23■□□□□ 0.03
VIMP08670 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VIMP08670 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC15.23■□□□□ 0.03
VIMP08670 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VIMP08670 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
VIMP08670 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VIMP08670 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VIMP08670 KRT8P24-201ENST00000560290 1559 ntBASIC15.23■□□□□ 0.03
VIMP08670 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC15.23■□□□□ 0.03
VIMP08670 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
VIMP08670 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
VIMP08670 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
VIMP08670 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VIMP08670 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VIMP08670 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.23■□□□□ 0.03
VIMP08670 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VIMP08670 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VIMP08670 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VIMP08670 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VIMP08670 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VIMP08670 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC15.22■□□□□ 0.03
VIMP08670 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC15.22■□□□□ 0.03
VIMP08670 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VIMP08670 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC15.22■□□□□ 0.03
VIMP08670 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC15.22■□□□□ 0.03
VIMP08670 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VIMP08670 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VIMP08670 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VIMP08670 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC15.22■□□□□ 0.03
VIMP08670 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
VIMP08670 HCG4B-203ENST00000450128 991 ntBASIC15.22■□□□□ 0.03
VIMP08670 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
VIMP08670 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.22■□□□□ 0.03
VIMP08670 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.22■□□□□ 0.03
VIMP08670 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
VIMP08670 AC026979.3-201ENST00000607315 403 ntBASIC15.22■□□□□ 0.03
VIMP08670 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC15.22■□□□□ 0.03
VIMP08670 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VIMP08670 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC15.22■□□□□ 0.03
VIMP08670 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
VIMP08670 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC15.22■□□□□ 0.03
VIMP08670 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
VIMP08670 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
VIMP08670 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.22■□□□□ 0.03
VIMP08670 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VIMP08670 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms