Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
LDB3O75112 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LDB3O75112 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.22□□□□□ -0.13
LDB3O75112 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
LDB3O75112 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
LDB3O75112 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.21□□□□□ -0.13
LDB3O75112 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
LDB3O75112 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.21□□□□□ -0.13
LDB3O75112 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LDB3O75112 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.21□□□□□ -0.13
LDB3O75112 AL138709.1-201ENST00000614840 1693 ntBASIC14.21□□□□□ -0.13
LDB3O75112 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LDB3O75112 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LDB3O75112 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.21□□□□□ -0.13
LDB3O75112 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LDB3O75112 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LDB3O75112 ZBTB12BP-201ENST00000314232 1122 ntBASIC14.21□□□□□ -0.13
LDB3O75112 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LDB3O75112 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LDB3O75112 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LDB3O75112 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
LDB3O75112 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LDB3O75112 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.21□□□□□ -0.13
LDB3O75112 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC14.21□□□□□ -0.13
LDB3O75112 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC14.21□□□□□ -0.13
LDB3O75112 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
LDB3O75112 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LDB3O75112 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC14.21□□□□□ -0.13
LDB3O75112 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.21□□□□□ -0.13
LDB3O75112 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC14.21□□□□□ -0.13
LDB3O75112 APOC4-201ENST00000591600 348 ntTSL 3 BASIC14.21□□□□□ -0.13
LDB3O75112 AC004466.1-201ENST00000599515 1080 ntBASIC14.21□□□□□ -0.13
LDB3O75112 AC244669.2-201ENST00000612320 853 ntBASIC14.21□□□□□ -0.13
LDB3O75112 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
LDB3O75112 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LDB3O75112 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.21□□□□□ -0.13
LDB3O75112 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
LDB3O75112 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LDB3O75112 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LDB3O75112 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LDB3O75112 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
LDB3O75112 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.21□□□□□ -0.13
LDB3O75112 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC14.21□□□□□ -0.13
LDB3O75112 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LDB3O75112 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LDB3O75112 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.21□□□□□ -0.13
LDB3O75112 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.21□□□□□ -0.14
LDB3O75112 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
LDB3O75112 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
LDB3O75112 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
LDB3O75112 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC14.21□□□□□ -0.14
LDB3O75112 AC106881.1-201ENST00000605849 3329 ntBASIC14.21□□□□□ -0.14
LDB3O75112 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
LDB3O75112 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
LDB3O75112 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
LDB3O75112 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LDB3O75112 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LDB3O75112 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LDB3O75112 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LDB3O75112 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LDB3O75112 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
LDB3O75112 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.2□□□□□ -0.14
LDB3O75112 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
LDB3O75112 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.2□□□□□ -0.14
LDB3O75112 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
LDB3O75112 AC018529.2-202ENST00000611482 3087 ntBASIC14.2□□□□□ -0.14
LDB3O75112 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LDB3O75112 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
LDB3O75112 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
LDB3O75112 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC14.2□□□□□ -0.14
LDB3O75112 U91328.1-201ENST00000437528 223 ntBASIC14.2□□□□□ -0.14
LDB3O75112 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC14.2□□□□□ -0.14
LDB3O75112 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC14.2□□□□□ -0.14
LDB3O75112 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
LDB3O75112 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
LDB3O75112 KRT17P8-201ENST00000540749 863 ntBASIC14.2□□□□□ -0.14
LDB3O75112 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC14.2□□□□□ -0.14
LDB3O75112 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.2□□□□□ -0.14
LDB3O75112 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC14.2□□□□□ -0.14
LDB3O75112 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
LDB3O75112 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.2□□□□□ -0.14
LDB3O75112 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.2□□□□□ -0.14
LDB3O75112 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LDB3O75112 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LDB3O75112 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC14.2□□□□□ -0.14
LDB3O75112 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LDB3O75112 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
LDB3O75112 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LDB3O75112 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.2□□□□□ -0.14
LDB3O75112 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.2□□□□□ -0.14
LDB3O75112 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
LDB3O75112 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC14.2□□□□□ -0.14
LDB3O75112 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms