Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC25.02■■□□□ 1.6
CUX2O14529 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CUX2O14529 TMA16-204ENST00000508268 608 ntTSL 2 BASIC25.02■■□□□ 1.6
CUX2O14529 MIR2278-201ENST00000516344 96 ntBASIC25.02■■□□□ 1.6
CUX2O14529 IGHV1-12-201ENST00000518307 205 ntBASIC25.02■■□□□ 1.6
CUX2O14529 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC25.02■■□□□ 1.6
CUX2O14529 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
CUX2O14529 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC25.02■■□□□ 1.6
CUX2O14529 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC25.02■■□□□ 1.6
CUX2O14529 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CUX2O14529 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
CUX2O14529 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CUX2O14529 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CUX2O14529 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
CUX2O14529 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CUX2O14529 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CUX2O14529 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CUX2O14529 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC25.02■■□□□ 1.6
CUX2O14529 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC25.02■■□□□ 1.6
CUX2O14529 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CUX2O14529 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC25.02■■□□□ 1.6
CUX2O14529 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CUX2O14529 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CUX2O14529 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CUX2O14529 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
CUX2O14529 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC25.02■■□□□ 1.6
CUX2O14529 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CUX2O14529 RNVU1-8-201ENST00000364272 125 ntBASIC25.02■■□□□ 1.6
CUX2O14529 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC25.02■■□□□ 1.6
CUX2O14529 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC25.02■■□□□ 1.6
CUX2O14529 KRT18P4-201ENST00000422599 1288 ntBASIC25.02■■□□□ 1.6
CUX2O14529 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC25.02■■□□□ 1.6
CUX2O14529 TPT1P6-201ENST00000458298 514 ntBASIC25.02■■□□□ 1.6
CUX2O14529 RN7SL363P-201ENST00000482412 273 ntBASIC25.02■■□□□ 1.6
CUX2O14529 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC25.02■■□□□ 1.6
CUX2O14529 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CUX2O14529 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC25.02■■□□□ 1.6
CUX2O14529 AC120498.7-201ENST00000562876 330 ntBASIC25.02■■□□□ 1.6
CUX2O14529 COX5A-205ENST00000568517 582 ntTSL 3 BASIC25.02■■□□□ 1.6
CUX2O14529 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC25.01■■□□□ 1.6
CUX2O14529 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
CUX2O14529 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC25.01■■□□□ 1.59
CUX2O14529 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC25.01■■□□□ 1.59
CUX2O14529 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CUX2O14529 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC25.01■■□□□ 1.59
CUX2O14529 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CUX2O14529 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC25.01■■□□□ 1.59
CUX2O14529 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
CUX2O14529 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC25.01■■□□□ 1.59
CUX2O14529 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC25.01■■□□□ 1.59
CUX2O14529 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CUX2O14529 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC25.01■■□□□ 1.59
CUX2O14529 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC25.01■■□□□ 1.59
CUX2O14529 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC25.01■■□□□ 1.59
CUX2O14529 STK24P1-201ENST00000455035 1291 ntBASIC25.01■■□□□ 1.59
CUX2O14529 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC25.01■■□□□ 1.59
CUX2O14529 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CUX2O14529 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
CUX2O14529 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC25.01■■□□□ 1.59
CUX2O14529 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC25.01■■□□□ 1.59
CUX2O14529 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC25.01■■□□□ 1.59
CUX2O14529 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC25.01■■□□□ 1.59
CUX2O14529 FCGR3A-208ENST00000638849 873 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CUX2O14529 LTB4R2-202ENST00000528054 3092 ntBASIC25.01■■□□□ 1.59
CUX2O14529 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC25■■□□□ 1.59
CUX2O14529 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC25■■□□□ 1.59
CUX2O14529 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CUX2O14529 PCDHA14-201ENST00000506751 2298 ntBASIC25■■□□□ 1.59
CUX2O14529 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC25■■□□□ 1.59
CUX2O14529 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
CUX2O14529 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CUX2O14529 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC25■■□□□ 1.59
CUX2O14529 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC25■■□□□ 1.59
CUX2O14529 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CUX2O14529 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC25■■□□□ 1.59
CUX2O14529 AC004801.1-201ENST00000549557 360 ntBASIC25■■□□□ 1.59
CUX2O14529 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC25■■□□□ 1.59
CUX2O14529 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC25■■□□□ 1.59
CUX2O14529 DERL2-206ENST00000572834 589 ntTSL 3 BASIC25■■□□□ 1.59
CUX2O14529 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC25■■□□□ 1.59
CUX2O14529 SRD5A3-AS1-203ENST00000591915 709 ntTSL 5 BASIC25■■□□□ 1.59
CUX2O14529 PRMT1P1-201ENST00000604252 1009 ntBASIC25■■□□□ 1.59
CUX2O14529 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
CUX2O14529 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CUX2O14529 SUPT20HL2-201ENST00000486479 2409 ntBASIC25■■□□□ 1.59
CUX2O14529 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CUX2O14529 GNG4-201ENST00000366597 1595 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CUX2O14529 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CUX2O14529 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC24.99■■□□□ 1.59
CUX2O14529 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC24.99■■□□□ 1.59
CUX2O14529 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC24.99■■□□□ 1.59
CUX2O14529 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC24.99■■□□□ 1.59
CUX2O14529 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CUX2O14529 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CUX2O14529 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CUX2O14529 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC24.99■■□□□ 1.59
CUX2O14529 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC24.99■■□□□ 1.59
CUX2O14529 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC24.99■■□□□ 1.59
CUX2O14529 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CUX2O14529 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC24.99■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms