Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.98□□□□□ -0.01
SSU72Q9NP77 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
SSU72Q9NP77 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SSU72Q9NP77 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SSU72Q9NP77 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SSU72Q9NP77 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SSU72Q9NP77 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SSU72Q9NP77 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
SSU72Q9NP77 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
SSU72Q9NP77 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SSU72Q9NP77 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SSU72Q9NP77 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SSU72Q9NP77 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
SSU72Q9NP77 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC14.97□□□□□ -0.01
SSU72Q9NP77 AC073548.1-201ENST00000624088 1882 ntBASIC14.97□□□□□ -0.01
SSU72Q9NP77 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
SSU72Q9NP77 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.97□□□□□ -0.01
SSU72Q9NP77 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.97□□□□□ -0.01
SSU72Q9NP77 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
SSU72Q9NP77 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SSU72Q9NP77 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SSU72Q9NP77 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SSU72Q9NP77 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
SSU72Q9NP77 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SSU72Q9NP77 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SSU72Q9NP77 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SSU72Q9NP77 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.97□□□□□ -0.01
SSU72Q9NP77 RPL30-202ENST00000396070 440 ntTSL 2 BASIC14.97□□□□□ -0.01
SSU72Q9NP77 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SSU72Q9NP77 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.97□□□□□ -0.01
SSU72Q9NP77 RPL37AP1-201ENST00000412502 279 ntBASIC14.97□□□□□ -0.01
SSU72Q9NP77 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC14.97□□□□□ -0.01
SSU72Q9NP77 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.97□□□□□ -0.01
SSU72Q9NP77 AL353779.1-201ENST00000434793 351 ntBASIC14.97□□□□□ -0.01
SSU72Q9NP77 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SSU72Q9NP77 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.97□□□□□ -0.01
SSU72Q9NP77 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
SSU72Q9NP77 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.97□□□□□ -0.01
SSU72Q9NP77 MTDHP5-201ENST00000598980 586 ntBASIC14.97□□□□□ -0.01
SSU72Q9NP77 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC14.97□□□□□ -0.01
SSU72Q9NP77 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.97□□□□□ -0.01
SSU72Q9NP77 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.97□□□□□ -0.01
SSU72Q9NP77 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC14.97□□□□□ -0.01
SSU72Q9NP77 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.97□□□□□ -0.01
SSU72Q9NP77 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SSU72Q9NP77 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.97□□□□□ -0.01
SSU72Q9NP77 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.97□□□□□ -0.01
SSU72Q9NP77 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SSU72Q9NP77 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
SSU72Q9NP77 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
SSU72Q9NP77 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SSU72Q9NP77 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SSU72Q9NP77 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
SSU72Q9NP77 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SSU72Q9NP77 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SSU72Q9NP77 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SSU72Q9NP77 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
SSU72Q9NP77 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SSU72Q9NP77 AC215219.1-201ENST00000400706 1817 ntBASIC14.96□□□□□ -0.01
SSU72Q9NP77 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC14.96□□□□□ -0.01
SSU72Q9NP77 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SSU72Q9NP77 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
SSU72Q9NP77 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SSU72Q9NP77 CLK3P2-201ENST00000427566 1453 ntBASIC14.96□□□□□ -0.01
SSU72Q9NP77 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SSU72Q9NP77 AL158070.2-201ENST00000623713 1621 ntBASIC14.96□□□□□ -0.01
SSU72Q9NP77 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SSU72Q9NP77 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
SSU72Q9NP77 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
SSU72Q9NP77 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
SSU72Q9NP77 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SSU72Q9NP77 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
SSU72Q9NP77 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
SSU72Q9NP77 CROT-203ENST00000419147 2959 ntTSL 2 BASIC14.96□□□□□ -0.01
SSU72Q9NP77 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SSU72Q9NP77 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SSU72Q9NP77 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SSU72Q9NP77 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SSU72Q9NP77 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SSU72Q9NP77 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SSU72Q9NP77 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
SSU72Q9NP77 PMP22-202ENST00000395936 816 ntTSL 3 BASIC14.96□□□□□ -0.01
SSU72Q9NP77 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.96□□□□□ -0.01
SSU72Q9NP77 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC14.96□□□□□ -0.01
SSU72Q9NP77 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SSU72Q9NP77 SDHAP3-202ENST00000515467 728 ntBASIC14.96□□□□□ -0.01
SSU72Q9NP77 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC14.96□□□□□ -0.01
SSU72Q9NP77 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.01
SSU72Q9NP77 KRT126P-201ENST00000549467 1181 ntBASIC14.96□□□□□ -0.01
SSU72Q9NP77 CETP-203ENST00000566128 1733 ntTSL 5 BASIC14.96□□□□□ -0.01
SSU72Q9NP77 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.96□□□□□ -0.01
SSU72Q9NP77 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC14.96□□□□□ -0.01
SSU72Q9NP77 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.96□□□□□ -0.01
SSU72Q9NP77 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SSU72Q9NP77 AC009093.7-201ENST00000623853 1223 ntBASIC14.96□□□□□ -0.01
SSU72Q9NP77 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC14.96□□□□□ -0.01
SSU72Q9NP77 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC14.96□□□□□ -0.01
SSU72Q9NP77 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SSU72Q9NP77 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SSU72Q9NP77 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms