Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 WASH6P-202ENST00000359512 1437 ntBASIC15.27■□□□□ 0.04
TRIM4Q9C037 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM4Q9C037 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM4Q9C037 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM4Q9C037 TCAF1P1-201ENST00000414990 2232 ntBASIC15.27■□□□□ 0.04
TRIM4Q9C037 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.27■□□□□ 0.04
TRIM4Q9C037 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM4Q9C037 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM4Q9C037 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.27■□□□□ 0.04
TRIM4Q9C037 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
TRIM4Q9C037 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM4Q9C037 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC15.27■□□□□ 0.04
TRIM4Q9C037 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM4Q9C037 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM4Q9C037 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
TRIM4Q9C037 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.27■□□□□ 0.04
TRIM4Q9C037 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
TRIM4Q9C037 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.27■□□□□ 0.04
TRIM4Q9C037 MPI-209ENST00000564003 1195 ntTSL 2 BASIC15.27■□□□□ 0.04
TRIM4Q9C037 WASH4P-201ENST00000564273 1246 ntBASIC15.27■□□□□ 0.04
TRIM4Q9C037 AL138918.1-201ENST00000568306 659 ntBASIC15.27■□□□□ 0.04
TRIM4Q9C037 AP000842.3-202ENST00000569238 1080 ntBASIC15.27■□□□□ 0.04
TRIM4Q9C037 MIR4538-201ENST00000581377 78 ntBASIC15.27■□□□□ 0.04
TRIM4Q9C037 MIR4259-201ENST00000584466 101 ntBASIC15.27■□□□□ 0.04
TRIM4Q9C037 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
TRIM4Q9C037 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
TRIM4Q9C037 AC008738.7-201ENST00000609744 511 ntBASIC15.27■□□□□ 0.04
TRIM4Q9C037 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC15.27■□□□□ 0.04
TRIM4Q9C037 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM4Q9C037 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM4Q9C037 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC15.27■□□□□ 0.03
TRIM4Q9C037 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM4Q9C037 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM4Q9C037 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM4Q9C037 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM4Q9C037 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM4Q9C037 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
TRIM4Q9C037 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM4Q9C037 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM4Q9C037 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC15.27■□□□□ 0.03
TRIM4Q9C037 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.27■□□□□ 0.03
TRIM4Q9C037 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM4Q9C037 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM4Q9C037 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM4Q9C037 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
TRIM4Q9C037 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM4Q9C037 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM4Q9C037 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM4Q9C037 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM4Q9C037 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM4Q9C037 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM4Q9C037 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM4Q9C037 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM4Q9C037 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM4Q9C037 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM4Q9C037 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM4Q9C037 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
TRIM4Q9C037 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM4Q9C037 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM4Q9C037 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.26■□□□□ 0.03
TRIM4Q9C037 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM4Q9C037 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM4Q9C037 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
TRIM4Q9C037 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM4Q9C037 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
TRIM4Q9C037 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.26■□□□□ 0.03
TRIM4Q9C037 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM4Q9C037 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
TRIM4Q9C037 BCYRN1-201ENST00000418539 200 ntBASIC15.26■□□□□ 0.03
TRIM4Q9C037 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
TRIM4Q9C037 USB1-203ENST00000539737 1212 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM4Q9C037 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM4Q9C037 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.26■□□□□ 0.03
TRIM4Q9C037 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM4Q9C037 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM4Q9C037 AC027307.2-201ENST00000591252 911 ntBASIC15.26■□□□□ 0.03
TRIM4Q9C037 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC15.26■□□□□ 0.03
TRIM4Q9C037 Z82170.1-201ENST00000625081 3192 ntBASIC15.26■□□□□ 0.03
TRIM4Q9C037 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
TRIM4Q9C037 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM4Q9C037 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
TRIM4Q9C037 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM4Q9C037 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
TRIM4Q9C037 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM4Q9C037 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRIM4Q9C037 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM4Q9C037 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM4Q9C037 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
TRIM4Q9C037 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
TRIM4Q9C037 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM4Q9C037 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM4Q9C037 MBLAC2-202ENST00000514906 1936 ntBASIC15.25■□□□□ 0.03
TRIM4Q9C037 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM4Q9C037 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM4Q9C037 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
TRIM4Q9C037 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM4Q9C037 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC15.25■□□□□ 0.03
TRIM4Q9C037 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
TRIM4Q9C037 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRIM4Q9C037 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms