Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 TOMM22P5-201ENST00000416399 439 ntBASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 SEZ6L-201ENST00000248933 3248 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 SEZ6L-210ENST00000629590 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 ANKRD26P3-201ENST00000454044 2748 ntBASIC4.72□□□□□ -1.65
SYNE1Q8NF91 LIN28A-201ENST00000254231 3458 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AC091951.1-201ENST00000512854 2465 ntBASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AC026410.3-201ENST00000514280 936 ntBASIC4.72□□□□□ -1.65
SYNE1Q8NF91 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 KCNH1-202ENST00000367007 3445 ntTSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 TTYH3-204ENST00000407643 4537 ntTSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 GOLGA6L10-209ENST00000621197 4160 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 DDR1-226ENST00000376569 3783 ntAPPRIS P3 TSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 HOXA-AS3-202ENST00000518947 3992 ntTSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AC024909.3-201ENST00000611513 2257 ntBASIC4.72□□□□□ -1.65
SYNE1Q8NF91 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 ZBTB12BP-201ENST00000314232 1122 ntBASIC4.72□□□□□ -1.65
SYNE1Q8NF91 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 RNF41-210ENST00000552244 716 ntTSL 3 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 HADH-212ENST00000638621 741 ntTSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 DGCR8-203ENST00000407755 4129 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 SERP1-203ENST00000479209 3934 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SYNE1Q8NF91 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms