Protein–RNA interactions for Protein: Q5TC12

ATPAF1, ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

Predicted RBP Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1Q5TC12 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 SYS1-203ENST00000414310 795 ntTSL 3 BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 USP40-206ENST00000443711 628 ntTSL 2 BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 AC044860.1-202ENST00000559481 777 ntBASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 5S_rRNA.22-201ENST00000614916 106 ntBASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC13.2□□□□□ -0.3
ATPAF1Q5TC12 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 ABR-205ENST00000544583 5595 ntTSL 2 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 MPI-203ENST00000535694 1523 ntTSL 2 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 RPL13P2-201ENST00000440687 659 ntBASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 INGX-202ENST00000489074 768 ntBASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 AC092337.1-201ENST00000568699 1129 ntBASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 PCDHGB8P-201ENST00000502926 1973 ntBASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
ATPAF1Q5TC12 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms