Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC24.5■■□□□ 1.51
CUX1P39880 CICP23-201ENST00000605013 2741 ntBASIC24.5■■□□□ 1.51
CUX1P39880 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CUX1P39880 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC24.5■■□□□ 1.51
CUX1P39880 AC136621.1-201ENST00000624017 2304 ntBASIC24.5■■□□□ 1.51
CUX1P39880 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
CUX1P39880 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CUX1P39880 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CUX1P39880 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC24.5■■□□□ 1.51
CUX1P39880 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC24.5■■□□□ 1.51
CUX1P39880 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC24.5■■□□□ 1.51
CUX1P39880 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC24.5■■□□□ 1.51
CUX1P39880 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC24.5■■□□□ 1.51
CUX1P39880 COX20P1-201ENST00000366529 357 ntBASIC24.5■■□□□ 1.51
CUX1P39880 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CUX1P39880 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC24.5■■□□□ 1.51
CUX1P39880 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC24.5■■□□□ 1.51
CUX1P39880 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC24.5■■□□□ 1.51
CUX1P39880 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CUX1P39880 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC24.5■■□□□ 1.51
CUX1P39880 EIF5AP2-201ENST00000585668 1047 ntBASIC24.5■■□□□ 1.51
CUX1P39880 AC090386.2-201ENST00000623010 1039 ntBASIC24.5■■□□□ 1.51
CUX1P39880 AL451007.2-201ENST00000632004 563 ntBASIC24.5■■□□□ 1.51
CUX1P39880 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
CUX1P39880 LINC00528-201ENST00000600723 2160 ntBASIC24.5■■□□□ 1.51
CUX1P39880 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC24.5■■□□□ 1.51
CUX1P39880 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC24.5■■□□□ 1.51
CUX1P39880 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC24.49■■□□□ 1.51
CUX1P39880 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CUX1P39880 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
CUX1P39880 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC24.49■■□□□ 1.51
CUX1P39880 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC24.49■■□□□ 1.51
CUX1P39880 ACE3P-201ENST00000423435 1973 ntBASIC24.49■■□□□ 1.51
CUX1P39880 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC24.49■■□□□ 1.51
CUX1P39880 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CUX1P39880 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
CUX1P39880 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
CUX1P39880 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CUX1P39880 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
CUX1P39880 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CUX1P39880 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC24.49■■□□□ 1.51
CUX1P39880 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC24.49■■□□□ 1.51
CUX1P39880 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC24.49■■□□□ 1.51
CUX1P39880 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
CUX1P39880 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC24.49■■□□□ 1.51
CUX1P39880 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC24.49■■□□□ 1.51
CUX1P39880 AC011471.3-201ENST00000623576 402 ntBASIC24.49■■□□□ 1.51
CUX1P39880 AC002472.4-201ENST00000641915 272 ntBASIC24.49■■□□□ 1.51
CUX1P39880 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CUX1P39880 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC24.49■■□□□ 1.51
CUX1P39880 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
CUX1P39880 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC24.48■■□□□ 1.51
CUX1P39880 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
CUX1P39880 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC24.48■■□□□ 1.51
CUX1P39880 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC24.48■■□□□ 1.51
CUX1P39880 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC24.48■■□□□ 1.51
CUX1P39880 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
CUX1P39880 HCG27-204ENST00000424675 895 ntTSL 3 BASIC24.48■■□□□ 1.51
CUX1P39880 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC24.48■■□□□ 1.51
CUX1P39880 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC24.48■■□□□ 1.51
CUX1P39880 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC24.48■■□□□ 1.51
CUX1P39880 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC24.48■■□□□ 1.51
CUX1P39880 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC24.48■■□□□ 1.51
CUX1P39880 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC24.48■■□□□ 1.51
CUX1P39880 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC24.48■■□□□ 1.51
CUX1P39880 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC24.48■■□□□ 1.51
CUX1P39880 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
CUX1P39880 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC24.48■■□□□ 1.51
CUX1P39880 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC24.48■■□□□ 1.51
CUX1P39880 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC24.48■■□□□ 1.51
CUX1P39880 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
CUX1P39880 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC24.48■■□□□ 1.51
CUX1P39880 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
CUX1P39880 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
CUX1P39880 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC24.48■■□□□ 1.51
CUX1P39880 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
CUX1P39880 FTX-216ENST00000638985 1367 ntTSL 5 BASIC24.48■■□□□ 1.51
CUX1P39880 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
CUX1P39880 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC24.47■■□□□ 1.51
CUX1P39880 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CUX1P39880 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
CUX1P39880 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC24.47■■□□□ 1.51
CUX1P39880 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
CUX1P39880 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CUX1P39880 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
CUX1P39880 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC24.47■■□□□ 1.51
CUX1P39880 AQP7P5-201ENST00000428759 1049 ntBASIC24.47■■□□□ 1.51
CUX1P39880 AQP7P4-201ENST00000447083 1042 ntBASIC24.47■■□□□ 1.51
CUX1P39880 AQP7P2-201ENST00000453967 1041 ntBASIC24.47■■□□□ 1.51
CUX1P39880 AREG-202ENST00000502307 956 ntTSL 5 BASIC24.47■■□□□ 1.51
CUX1P39880 IGHV1-12-201ENST00000518307 205 ntBASIC24.47■■□□□ 1.51
CUX1P39880 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
CUX1P39880 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC24.47■■□□□ 1.51
CUX1P39880 AC007250.1-201ENST00000608934 338 ntBASIC24.47■■□□□ 1.51
CUX1P39880 AQP7P3-201ENST00000624547 1041 ntBASIC24.47■■□□□ 1.51
CUX1P39880 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC24.47■■□□□ 1.51
CUX1P39880 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC24.47■■□□□ 1.51
CUX1P39880 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC24.47■■□□□ 1.51
CUX1P39880 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC24.47■■□□□ 1.51
CUX1P39880 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms