Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SCN4AP35499 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC17.29■□□□□ 0.36
SCN4AP35499 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SCN4AP35499 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SCN4AP35499 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
SCN4AP35499 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC17.28■□□□□ 0.36
SCN4AP35499 KNOP1P1-201ENST00000542108 989 ntBASIC17.28■□□□□ 0.36
SCN4AP35499 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SCN4AP35499 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SCN4AP35499 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC17.28■□□□□ 0.36
SCN4AP35499 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC17.28■□□□□ 0.36
SCN4AP35499 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC17.28■□□□□ 0.36
SCN4AP35499 F10-203ENST00000409306 1450 ntTSL 3 BASIC17.28■□□□□ 0.36
SCN4AP35499 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC17.28■□□□□ 0.36
SCN4AP35499 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SCN4AP35499 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC17.28■□□□□ 0.36
SCN4AP35499 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SCN4AP35499 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.28■□□□□ 0.36
SCN4AP35499 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SCN4AP35499 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
SCN4AP35499 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
SCN4AP35499 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SCN4AP35499 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SCN4AP35499 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.28■□□□□ 0.36
SCN4AP35499 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SCN4AP35499 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC17.28■□□□□ 0.36
SCN4AP35499 AC024909.3-201ENST00000611513 2257 ntBASIC17.28■□□□□ 0.36
SCN4AP35499 AL603832.2-201ENST00000566195 2125 ntBASIC17.28■□□□□ 0.36
SCN4AP35499 BRD7P5-201ENST00000299197 1822 ntBASIC17.28■□□□□ 0.36
SCN4AP35499 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC17.28■□□□□ 0.36
SCN4AP35499 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SCN4AP35499 NHP2P1-201ENST00000335274 462 ntBASIC17.28■□□□□ 0.36
SCN4AP35499 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC17.28■□□□□ 0.36
SCN4AP35499 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC17.28■□□□□ 0.36
SCN4AP35499 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC17.28■□□□□ 0.36
SCN4AP35499 PFN2-212ENST00000490975 858 ntTSL 4 BASIC17.28■□□□□ 0.36
SCN4AP35499 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC17.28■□□□□ 0.36
SCN4AP35499 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC17.28■□□□□ 0.36
SCN4AP35499 EMC4-208ENST00000559078 599 ntTSL 3 BASIC17.28■□□□□ 0.36
SCN4AP35499 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SCN4AP35499 RARS-210ENST00000626454 177 ntTSL 5 BASIC17.28■□□□□ 0.36
SCN4AP35499 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.28■□□□□ 0.36
SCN4AP35499 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SCN4AP35499 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.28■□□□□ 0.36
SCN4AP35499 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC17.28■□□□□ 0.36
SCN4AP35499 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
SCN4AP35499 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC17.28■□□□□ 0.36
SCN4AP35499 AGGF1P1-201ENST00000509500 2073 ntBASIC17.27■□□□□ 0.36
SCN4AP35499 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SCN4AP35499 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SCN4AP35499 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
SCN4AP35499 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SCN4AP35499 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
SCN4AP35499 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
SCN4AP35499 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SCN4AP35499 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SCN4AP35499 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC17.27■□□□□ 0.36
SCN4AP35499 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC17.27■□□□□ 0.36
SCN4AP35499 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC17.27■□□□□ 0.36
SCN4AP35499 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC17.27■□□□□ 0.36
SCN4AP35499 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC17.27■□□□□ 0.36
SCN4AP35499 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC17.27■□□□□ 0.36
SCN4AP35499 AP000845.1-201ENST00000581677 2131 ntBASIC17.27■□□□□ 0.36
SCN4AP35499 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC17.27■□□□□ 0.36
SCN4AP35499 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC17.27■□□□□ 0.36
SCN4AP35499 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.27■□□□□ 0.36
SCN4AP35499 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.27■□□□□ 0.36
SCN4AP35499 KHSRPP1-201ENST00000427983 1768 ntBASIC17.27■□□□□ 0.35
SCN4AP35499 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SCN4AP35499 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.27■□□□□ 0.35
SCN4AP35499 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC17.27■□□□□ 0.35
SCN4AP35499 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SCN4AP35499 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.27■□□□□ 0.35
SCN4AP35499 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC17.27■□□□□ 0.35
SCN4AP35499 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
SCN4AP35499 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC17.26■□□□□ 0.35
SCN4AP35499 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SCN4AP35499 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SCN4AP35499 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
SCN4AP35499 RNVU1-8-201ENST00000364272 125 ntBASIC17.26■□□□□ 0.35
SCN4AP35499 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
SCN4AP35499 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SCN4AP35499 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC17.26■□□□□ 0.35
SCN4AP35499 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC17.26■□□□□ 0.35
SCN4AP35499 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC17.26■□□□□ 0.35
SCN4AP35499 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC17.26■□□□□ 0.35
SCN4AP35499 AL132994.1-201ENST00000554098 400 ntBASIC17.26■□□□□ 0.35
SCN4AP35499 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC17.26■□□□□ 0.35
SCN4AP35499 SNORD3B-1-201ENST00000577988 758 ntBASIC17.26■□□□□ 0.35
SCN4AP35499 NT5C-204ENST00000578337 582 ntTSL 2 BASIC17.26■□□□□ 0.35
SCN4AP35499 FBXO36P1-201ENST00000579006 471 ntBASIC17.26■□□□□ 0.35
SCN4AP35499 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC17.26■□□□□ 0.35
SCN4AP35499 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC17.26■□□□□ 0.35
SCN4AP35499 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC17.26■□□□□ 0.35
SCN4AP35499 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SCN4AP35499 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SCN4AP35499 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SCN4AP35499 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC17.26■□□□□ 0.35
SCN4AP35499 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SCN4AP35499 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms