Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXC9P31274 CAP2P1-201ENST00000557743 1390 ntBASIC19.7■□□□□ 0.74
HOXC9P31274 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXC9P31274 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
HOXC9P31274 AL590440.2-201ENST00000641973 1595 ntBASIC19.7■□□□□ 0.74
HOXC9P31274 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
HOXC9P31274 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC9P31274 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC9P31274 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC9P31274 STK26-204ENST00000481105 1835 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXC9P31274 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC9P31274 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC9P31274 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC9P31274 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC9P31274 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC9P31274 NCR3-202ENST00000376071 541 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXC9P31274 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXC9P31274 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC9P31274 RN7SL181P-201ENST00000462921 277 ntBASIC19.7■□□□□ 0.74
HOXC9P31274 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC9P31274 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXC9P31274 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC19.7■□□□□ 0.74
HOXC9P31274 MIR3677-201ENST00000578964 60 ntBASIC19.7■□□□□ 0.74
HOXC9P31274 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC19.7■□□□□ 0.74
HOXC9P31274 HPN-206ENST00000597419 1212 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXC9P31274 AP003419.4-201ENST00000616071 517 ntBASIC19.7■□□□□ 0.74
HOXC9P31274 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC9P31274 AC051619.9-201ENST00000623237 597 ntBASIC19.7■□□□□ 0.74
HOXC9P31274 AC092299.1-201ENST00000632679 757 ntBASIC19.7■□□□□ 0.74
HOXC9P31274 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXC9P31274 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC9P31274 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC9P31274 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC9P31274 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC9P31274 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC9P31274 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC9P31274 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
HOXC9P31274 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC19.7■□□□□ 0.74
HOXC9P31274 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC9P31274 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC9P31274 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC9P31274 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HOXC9P31274 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC19.7■□□□□ 0.74
HOXC9P31274 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC19.69■□□□□ 0.74
HOXC9P31274 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC19.69■□□□□ 0.74
HOXC9P31274 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC9P31274 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC9P31274 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC9P31274 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC19.69■□□□□ 0.74
HOXC9P31274 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC19.69■□□□□ 0.74
HOXC9P31274 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC19.69■□□□□ 0.74
HOXC9P31274 AL627231.1-201ENST00000394467 1125 ntBASIC19.69■□□□□ 0.74
HOXC9P31274 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC19.69■□□□□ 0.74
HOXC9P31274 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC9P31274 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC19.69■□□□□ 0.74
HOXC9P31274 HNRNPA1P27-201ENST00000412087 955 ntBASIC19.69■□□□□ 0.74
HOXC9P31274 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC19.69■□□□□ 0.74
HOXC9P31274 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC19.69■□□□□ 0.74
HOXC9P31274 NOC2LP1-201ENST00000450578 752 ntBASIC19.69■□□□□ 0.74
HOXC9P31274 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
HOXC9P31274 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC19.69■□□□□ 0.74
HOXC9P31274 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC19.69■□□□□ 0.74
HOXC9P31274 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC19.69■□□□□ 0.74
HOXC9P31274 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC19.69■□□□□ 0.74
HOXC9P31274 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC9P31274 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC9P31274 FRMPD2B-201ENST00000431305 1347 ntBASIC19.69■□□□□ 0.74
HOXC9P31274 AL162727.3-201ENST00000635661 2787 ntBASIC19.69■□□□□ 0.74
HOXC9P31274 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC9P31274 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC9P31274 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC19.69■□□□□ 0.74
HOXC9P31274 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC9P31274 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
HOXC9P31274 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC9P31274 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC9P31274 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC9P31274 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC19.68■□□□□ 0.74
HOXC9P31274 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC9P31274 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC9P31274 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC19.68■□□□□ 0.74
HOXC9P31274 F10-203ENST00000409306 1450 ntTSL 3 BASIC19.68■□□□□ 0.74
HOXC9P31274 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC9P31274 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC9P31274 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC19.68■□□□□ 0.74
HOXC9P31274 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC9P31274 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC9P31274 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC9P31274 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC9P31274 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC19.68■□□□□ 0.74
HOXC9P31274 AC098935.1-201ENST00000446057 611 ntBASIC19.68■□□□□ 0.74
HOXC9P31274 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC9P31274 AC104784.1-201ENST00000473096 294 ntBASIC19.68■□□□□ 0.74
HOXC9P31274 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC19.68■□□□□ 0.74
HOXC9P31274 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC19.68■□□□□ 0.74
HOXC9P31274 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC9P31274 AC138894.2-201ENST00000602838 371 ntBASIC19.68■□□□□ 0.74
HOXC9P31274 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC19.68■□□□□ 0.74
HOXC9P31274 YRDCP1-201ENST00000621419 643 ntBASIC19.68■□□□□ 0.74
HOXC9P31274 AL805961.1-201ENST00000642026 753 ntBASIC19.68■□□□□ 0.74
HOXC9P31274 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms