Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCD3P28288 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCD3P28288 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCD3P28288 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC13.94□□□□□ -0.18
ABCD3P28288 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC13.94□□□□□ -0.18
ABCD3P28288 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC13.94□□□□□ -0.18
ABCD3P28288 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC13.94□□□□□ -0.18
ABCD3P28288 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ABCD3P28288 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC13.94□□□□□ -0.18
ABCD3P28288 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC13.94□□□□□ -0.18
ABCD3P28288 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC13.94□□□□□ -0.18
ABCD3P28288 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ABCD3P28288 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
ABCD3P28288 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC13.94□□□□□ -0.18
ABCD3P28288 RPL28-206ENST00000558752 671 ntTSL 3 BASIC13.94□□□□□ -0.18
ABCD3P28288 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC13.94□□□□□ -0.18
ABCD3P28288 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCD3P28288 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ABCD3P28288 ETV2-208ENST00000621247 941 ntTSL 5 BASIC13.94□□□□□ -0.18
ABCD3P28288 ENPP7P14-201ENST00000621765 1040 ntBASIC13.94□□□□□ -0.18
ABCD3P28288 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
ABCD3P28288 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCD3P28288 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
ABCD3P28288 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.94□□□□□ -0.18
ABCD3P28288 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ABCD3P28288 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCD3P28288 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ABCD3P28288 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ABCD3P28288 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC13.94□□□□□ -0.18
ABCD3P28288 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ABCD3P28288 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCD3P28288 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCD3P28288 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCD3P28288 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCD3P28288 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ABCD3P28288 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC13.93□□□□□ -0.18
ABCD3P28288 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC13.93□□□□□ -0.18
ABCD3P28288 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC13.93□□□□□ -0.18
ABCD3P28288 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC13.93□□□□□ -0.18
ABCD3P28288 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC13.93□□□□□ -0.18
ABCD3P28288 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.93□□□□□ -0.18
ABCD3P28288 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC13.93□□□□□ -0.18
ABCD3P28288 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
ABCD3P28288 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 AC245100.3-201ENST00000441281 285 ntBASIC13.93□□□□□ -0.18
ABCD3P28288 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC13.93□□□□□ -0.18
ABCD3P28288 RPL8-205ENST00000527914 551 ntTSL 3 BASIC13.93□□□□□ -0.18
ABCD3P28288 KRT90P-201ENST00000549264 1064 ntBASIC13.93□□□□□ -0.18
ABCD3P28288 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC13.93□□□□□ -0.18
ABCD3P28288 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
ABCD3P28288 LARP4-220ENST00000615080 856 ntTSL 5 BASIC13.93□□□□□ -0.18
ABCD3P28288 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC13.93□□□□□ -0.18
ABCD3P28288 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
ABCD3P28288 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC13.93□□□□□ -0.18
ABCD3P28288 CICP4-201ENST00000447359 2812 ntBASIC13.93□□□□□ -0.18
ABCD3P28288 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 AC023090.2-201ENST00000625182 2110 ntBASIC13.93□□□□□ -0.18
ABCD3P28288 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
ABCD3P28288 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
ABCD3P28288 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC13.92□□□□□ -0.18
ABCD3P28288 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC13.92□□□□□ -0.18
ABCD3P28288 AJ011931.1-201ENST00000618749 2492 ntBASIC13.92□□□□□ -0.18
ABCD3P28288 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCD3P28288 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC13.92□□□□□ -0.18
ABCD3P28288 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCD3P28288 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
ABCD3P28288 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCD3P28288 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCD3P28288 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCD3P28288 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCD3P28288 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC13.92□□□□□ -0.18
ABCD3P28288 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
ABCD3P28288 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
ABCD3P28288 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCD3P28288 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
ABCD3P28288 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCD3P28288 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms