Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 IGHV3-37-201ENST00000518544 340 ntBASIC18■□□□□ 0.47
COL4A1P02462 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC18■□□□□ 0.47
COL4A1P02462 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
COL4A1P02462 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL4A1P02462 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC18■□□□□ 0.47
COL4A1P02462 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC18■□□□□ 0.47
COL4A1P02462 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL4A1P02462 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC18■□□□□ 0.47
COL4A1P02462 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL4A1P02462 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
COL4A1P02462 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
COL4A1P02462 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC18■□□□□ 0.47
COL4A1P02462 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL4A1P02462 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
COL4A1P02462 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC18■□□□□ 0.47
COL4A1P02462 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC18■□□□□ 0.47
COL4A1P02462 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC18■□□□□ 0.47
COL4A1P02462 IL9RP3-201ENST00000442856 1674 ntBASIC18■□□□□ 0.47
COL4A1P02462 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC18■□□□□ 0.47
COL4A1P02462 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
COL4A1P02462 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL4A1P02462 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
COL4A1P02462 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
COL4A1P02462 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
COL4A1P02462 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC18■□□□□ 0.47
COL4A1P02462 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC18■□□□□ 0.47
COL4A1P02462 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC17.99■□□□□ 0.47
COL4A1P02462 AJ011931.1-201ENST00000618749 2492 ntBASIC17.99■□□□□ 0.47
COL4A1P02462 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
COL4A1P02462 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC17.99■□□□□ 0.47
COL4A1P02462 RPSAP15-201ENST00000448168 861 ntBASIC17.99■□□□□ 0.47
COL4A1P02462 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC17.99■□□□□ 0.47
COL4A1P02462 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC17.99■□□□□ 0.47
COL4A1P02462 ORAOV1P1-201ENST00000503108 395 ntBASIC17.99■□□□□ 0.47
COL4A1P02462 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC17.99■□□□□ 0.47
COL4A1P02462 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC17.99■□□□□ 0.47
COL4A1P02462 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC17.99■□□□□ 0.47
COL4A1P02462 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC17.99■□□□□ 0.47
COL4A1P02462 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A1P02462 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC17.99■□□□□ 0.47
COL4A1P02462 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
COL4A1P02462 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC17.99■□□□□ 0.47
COL4A1P02462 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A1P02462 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC17.99■□□□□ 0.47
COL4A1P02462 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A1P02462 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A1P02462 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
COL4A1P02462 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A1P02462 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
COL4A1P02462 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
COL4A1P02462 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC17.99■□□□□ 0.47
COL4A1P02462 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
COL4A1P02462 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC17.99■□□□□ 0.47
COL4A1P02462 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A1P02462 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A1P02462 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.99■□□□□ 0.47
COL4A1P02462 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A1P02462 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A1P02462 RN7SL8P-201ENST00000461771 266 ntBASIC17.99■□□□□ 0.47
COL4A1P02462 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC17.99■□□□□ 0.47
COL4A1P02462 AC073911.3-201ENST00000624401 631 ntBASIC17.99■□□□□ 0.47
COL4A1P02462 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC17.99■□□□□ 0.47
COL4A1P02462 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A1P02462 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A1P02462 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A1P02462 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC17.99■□□□□ 0.47
COL4A1P02462 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A1P02462 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC17.99■□□□□ 0.47
COL4A1P02462 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC17.98■□□□□ 0.47
COL4A1P02462 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A1P02462 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
COL4A1P02462 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A1P02462 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A1P02462 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A1P02462 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A1P02462 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC17.98■□□□□ 0.47
COL4A1P02462 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC17.98■□□□□ 0.47
COL4A1P02462 AP002353.1-201ENST00000528257 1599 ntBASIC17.98■□□□□ 0.47
COL4A1P02462 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC17.98■□□□□ 0.47
COL4A1P02462 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A1P02462 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A1P02462 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A1P02462 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A1P02462 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A1P02462 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC17.98■□□□□ 0.47
COL4A1P02462 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC17.98■□□□□ 0.47
COL4A1P02462 DUTP3-201ENST00000450025 415 ntBASIC17.98■□□□□ 0.47
COL4A1P02462 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC17.98■□□□□ 0.47
COL4A1P02462 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A1P02462 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC17.98■□□□□ 0.47
COL4A1P02462 POU5F1P2-201ENST00000521750 823 ntBASIC17.98■□□□□ 0.47
COL4A1P02462 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A1P02462 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
COL4A1P02462 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A1P02462 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A1P02462 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC17.98■□□□□ 0.47
COL4A1P02462 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A1P02462 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC17.98■□□□□ 0.47
COL4A1P02462 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A1P02462 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms