Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
NPHP1O15259 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
NPHP1O15259 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NPHP1O15259 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NPHP1O15259 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NPHP1O15259 MTHFR-217ENST00000641820 1569 ntBASIC19.03■□□□□ 0.64
NPHP1O15259 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC19.03■□□□□ 0.64
NPHP1O15259 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC19.03■□□□□ 0.64
NPHP1O15259 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC19.03■□□□□ 0.64
NPHP1O15259 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
NPHP1O15259 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NPHP1O15259 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
NPHP1O15259 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
NPHP1O15259 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
NPHP1O15259 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC19.03■□□□□ 0.64
NPHP1O15259 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC19.03■□□□□ 0.64
NPHP1O15259 FTLP1-201ENST00000449155 526 ntBASIC19.03■□□□□ 0.64
NPHP1O15259 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
NPHP1O15259 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC19.03■□□□□ 0.64
NPHP1O15259 AC022217.1-201ENST00000521069 738 ntBASIC19.03■□□□□ 0.64
NPHP1O15259 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC19.03■□□□□ 0.64
NPHP1O15259 AP003171.2-201ENST00000528208 925 ntBASIC19.03■□□□□ 0.64
NPHP1O15259 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC19.03■□□□□ 0.64
NPHP1O15259 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC19.03■□□□□ 0.64
NPHP1O15259 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC19.03■□□□□ 0.64
NPHP1O15259 AC138466.3-201ENST00000619983 221 ntBASIC19.03■□□□□ 0.64
NPHP1O15259 AC100757.4-201ENST00000626934 759 ntBASIC19.03■□□□□ 0.64
NPHP1O15259 AL603764.1-201ENST00000636452 321 ntBASIC19.03■□□□□ 0.64
NPHP1O15259 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NPHP1O15259 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NPHP1O15259 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC19.03■□□□□ 0.64
NPHP1O15259 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NPHP1O15259 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NPHP1O15259 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
NPHP1O15259 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NPHP1O15259 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC19.03■□□□□ 0.64
NPHP1O15259 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NPHP1O15259 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
NPHP1O15259 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
NPHP1O15259 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
NPHP1O15259 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC19.03■□□□□ 0.64
NPHP1O15259 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
NPHP1O15259 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
NPHP1O15259 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
NPHP1O15259 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC19.02■□□□□ 0.64
NPHP1O15259 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
NPHP1O15259 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
NPHP1O15259 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
NPHP1O15259 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
NPHP1O15259 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
NPHP1O15259 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC19.02■□□□□ 0.64
NPHP1O15259 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
NPHP1O15259 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
NPHP1O15259 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
NPHP1O15259 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
NPHP1O15259 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
NPHP1O15259 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC19.02■□□□□ 0.64
NPHP1O15259 CHMP1AP1-201ENST00000445563 662 ntBASIC19.02■□□□□ 0.64
NPHP1O15259 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC19.02■□□□□ 0.64
NPHP1O15259 NUP210P1-202ENST00000504322 710 ntBASIC19.02■□□□□ 0.64
NPHP1O15259 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC19.02■□□□□ 0.64
NPHP1O15259 MIR4722-201ENST00000578292 60 ntBASIC19.02■□□□□ 0.64
NPHP1O15259 MIR3907-201ENST00000579424 151 ntBASIC19.02■□□□□ 0.64
NPHP1O15259 RN7SL163P-201ENST00000583100 276 ntBASIC19.02■□□□□ 0.64
NPHP1O15259 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC19.02■□□□□ 0.64
NPHP1O15259 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC19.02■□□□□ 0.64
NPHP1O15259 AC026740.1-201ENST00000607068 791 ntBASIC19.02■□□□□ 0.64
NPHP1O15259 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC19.02■□□□□ 0.64
NPHP1O15259 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC19.02■□□□□ 0.64
NPHP1O15259 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC19.02■□□□□ 0.64
NPHP1O15259 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
NPHP1O15259 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
NPHP1O15259 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
NPHP1O15259 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
NPHP1O15259 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
NPHP1O15259 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC19.02■□□□□ 0.63
NPHP1O15259 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
NPHP1O15259 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC19.02■□□□□ 0.63
NPHP1O15259 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
NPHP1O15259 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
NPHP1O15259 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
NPHP1O15259 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
NPHP1O15259 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
NPHP1O15259 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC19.02■□□□□ 0.63
NPHP1O15259 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC19.02■□□□□ 0.63
NPHP1O15259 SLC9A7P1-201ENST00000554295 3311 ntBASIC19.02■□□□□ 0.63
NPHP1O15259 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
NPHP1O15259 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
NPHP1O15259 PCDHA3-202ENST00000532566 4594 ntBASIC19.01■□□□□ 0.63
NPHP1O15259 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
NPHP1O15259 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC19.01■□□□□ 0.63
NPHP1O15259 CLUHP2-201ENST00000426660 1303 ntBASIC19.01■□□□□ 0.63
NPHP1O15259 FKBP4P6-201ENST00000457486 1332 ntBASIC19.01■□□□□ 0.63
NPHP1O15259 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NPHP1O15259 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC19.01■□□□□ 0.63
NPHP1O15259 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NPHP1O15259 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
NPHP1O15259 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC19.01■□□□□ 0.63
NPHP1O15259 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
NPHP1O15259 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms