Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM38O00635 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.28■□□□□ 0.04
TRIM38O00635 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM38O00635 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
TRIM38O00635 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM38O00635 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM38O00635 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
TRIM38O00635 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM38O00635 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC15.28■□□□□ 0.04
TRIM38O00635 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC15.28■□□□□ 0.04
TRIM38O00635 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM38O00635 APOC3-202ENST00000375345 604 ntTSL 5 BASIC15.28■□□□□ 0.04
TRIM38O00635 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM38O00635 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC15.28■□□□□ 0.04
TRIM38O00635 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC15.28■□□□□ 0.04
TRIM38O00635 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC15.28■□□□□ 0.04
TRIM38O00635 AC016694.1-201ENST00000434179 700 ntBASIC15.28■□□□□ 0.04
TRIM38O00635 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC15.28■□□□□ 0.04
TRIM38O00635 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC15.28■□□□□ 0.04
TRIM38O00635 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
TRIM38O00635 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC15.28■□□□□ 0.04
TRIM38O00635 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
TRIM38O00635 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC15.28■□□□□ 0.04
TRIM38O00635 ATF5-205ENST00000600336 682 ntTSL 2 BASIC15.28■□□□□ 0.04
TRIM38O00635 AC000095.1-201ENST00000603208 874 ntBASIC15.28■□□□□ 0.04
TRIM38O00635 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC15.28■□□□□ 0.04
TRIM38O00635 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC15.28■□□□□ 0.04
TRIM38O00635 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM38O00635 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.28■□□□□ 0.04
TRIM38O00635 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM38O00635 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM38O00635 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM38O00635 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM38O00635 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM38O00635 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM38O00635 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.28■□□□□ 0.04
TRIM38O00635 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM38O00635 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM38O00635 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.28■□□□□ 0.04
TRIM38O00635 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM38O00635 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM38O00635 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
TRIM38O00635 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM38O00635 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
TRIM38O00635 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
TRIM38O00635 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM38O00635 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC15.28■□□□□ 0.04
TRIM38O00635 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
TRIM38O00635 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM38O00635 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM38O00635 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
TRIM38O00635 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM38O00635 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM38O00635 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
TRIM38O00635 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC15.27■□□□□ 0.04
TRIM38O00635 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM38O00635 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM38O00635 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.27■□□□□ 0.04
TRIM38O00635 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.04
TRIM38O00635 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.27■□□□□ 0.04
TRIM38O00635 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM38O00635 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.27■□□□□ 0.04
TRIM38O00635 AC007686.3-201ENST00000619017 3487 ntBASIC15.27■□□□□ 0.04
TRIM38O00635 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM38O00635 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM38O00635 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM38O00635 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM38O00635 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM38O00635 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC15.27■□□□□ 0.04
TRIM38O00635 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC15.27■□□□□ 0.04
TRIM38O00635 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
TRIM38O00635 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM38O00635 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC15.27■□□□□ 0.04
TRIM38O00635 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC15.27■□□□□ 0.04
TRIM38O00635 AC108725.1-201ENST00000495472 409 ntBASIC15.27■□□□□ 0.04
TRIM38O00635 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.27■□□□□ 0.04
TRIM38O00635 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC15.27■□□□□ 0.04
TRIM38O00635 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC15.27■□□□□ 0.04
TRIM38O00635 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.27■□□□□ 0.04
TRIM38O00635 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC15.27■□□□□ 0.04
TRIM38O00635 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRIM38O00635 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC15.27■□□□□ 0.04
TRIM38O00635 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC15.27■□□□□ 0.04
TRIM38O00635 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
TRIM38O00635 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.27■□□□□ 0.04
TRIM38O00635 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC15.27■□□□□ 0.04
TRIM38O00635 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC15.27■□□□□ 0.04
TRIM38O00635 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC15.27■□□□□ 0.04
TRIM38O00635 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM38O00635 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
TRIM38O00635 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.27■□□□□ 0.03
TRIM38O00635 AC005912.2-201ENST00000619492 2400 ntBASIC15.27■□□□□ 0.03
TRIM38O00635 AC139749.1-202ENST00000617529 3139 ntBASIC15.27■□□□□ 0.03
TRIM38O00635 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM38O00635 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
TRIM38O00635 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM38O00635 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM38O00635 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRIM38O00635 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC15.26■□□□□ 0.03
TRIM38O00635 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms