Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
UPK1AO00322 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
UPK1AO00322 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
UPK1AO00322 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
UPK1AO00322 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
UPK1AO00322 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
UPK1AO00322 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.34□□□□□ -0.11
UPK1AO00322 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
UPK1AO00322 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.34□□□□□ -0.11
UPK1AO00322 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
UPK1AO00322 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
UPK1AO00322 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
UPK1AO00322 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.34□□□□□ -0.11
UPK1AO00322 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
UPK1AO00322 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
UPK1AO00322 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
UPK1AO00322 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC14.33□□□□□ -0.11
UPK1AO00322 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
UPK1AO00322 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
UPK1AO00322 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
UPK1AO00322 AL138799.1-201ENST00000448213 1675 ntBASIC14.33□□□□□ -0.11
UPK1AO00322 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
UPK1AO00322 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
UPK1AO00322 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
UPK1AO00322 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 AC007541.1-201ENST00000570282 1469 ntBASIC14.33□□□□□ -0.12
UPK1AO00322 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.33□□□□□ -0.12
UPK1AO00322 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.33□□□□□ -0.12
UPK1AO00322 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.33□□□□□ -0.12
UPK1AO00322 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.33□□□□□ -0.12
UPK1AO00322 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.33□□□□□ -0.12
UPK1AO00322 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 RPL13AP25-201ENST00000484130 612 ntBASIC14.33□□□□□ -0.12
UPK1AO00322 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.33□□□□□ -0.12
UPK1AO00322 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.33□□□□□ -0.12
UPK1AO00322 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.33□□□□□ -0.12
UPK1AO00322 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
UPK1AO00322 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC14.33□□□□□ -0.12
UPK1AO00322 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.33□□□□□ -0.12
UPK1AO00322 LINC02560-201ENST00000596379 459 ntBASIC14.33□□□□□ -0.12
UPK1AO00322 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.33□□□□□ -0.12
UPK1AO00322 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
UPK1AO00322 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
UPK1AO00322 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
UPK1AO00322 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
UPK1AO00322 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.33□□□□□ -0.12
UPK1AO00322 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.33□□□□□ -0.12
UPK1AO00322 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
UPK1AO00322 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
UPK1AO00322 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
UPK1AO00322 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
UPK1AO00322 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
UPK1AO00322 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
UPK1AO00322 AL359881.3-201ENST00000602640 1721 ntBASIC14.32□□□□□ -0.12
UPK1AO00322 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
UPK1AO00322 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
UPK1AO00322 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
UPK1AO00322 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.32□□□□□ -0.12
UPK1AO00322 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
UPK1AO00322 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
UPK1AO00322 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
UPK1AO00322 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
UPK1AO00322 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
UPK1AO00322 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
UPK1AO00322 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
UPK1AO00322 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
UPK1AO00322 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
UPK1AO00322 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
UPK1AO00322 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.32□□□□□ -0.12
UPK1AO00322 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
UPK1AO00322 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
UPK1AO00322 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
UPK1AO00322 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.32□□□□□ -0.12
UPK1AO00322 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms