Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PCDHGA4Q9Y5G9 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC22.53■■□□□ 1.2
PCDHGA4Q9Y5G9 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDHGA4Q9Y5G9 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
PCDHGA4Q9Y5G9 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDHGA4Q9Y5G9 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC22.52■■□□□ 1.2
PCDHGA4Q9Y5G9 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDHGA4Q9Y5G9 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC22.52■■□□□ 1.2
PCDHGA4Q9Y5G9 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC22.52■■□□□ 1.2
PCDHGA4Q9Y5G9 TRIR-202ENST00000588213 841 ntTSL 3 BASIC22.52■■□□□ 1.2
PCDHGA4Q9Y5G9 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDHGA4Q9Y5G9 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDHGA4Q9Y5G9 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCDHGA4Q9Y5G9 AC022211.4-201ENST00000625094 2161 ntBASIC22.52■■□□□ 1.2
PCDHGA4Q9Y5G9 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
PCDHGA4Q9Y5G9 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC22.51■■□□□ 1.19
PCDHGA4Q9Y5G9 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PCDHGA4Q9Y5G9 NALT1-201ENST00000429224 738 ntTSL 5 BASIC22.51■■□□□ 1.19
PCDHGA4Q9Y5G9 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC22.51■■□□□ 1.19
PCDHGA4Q9Y5G9 AC120024.1-201ENST00000562672 995 ntBASIC22.51■■□□□ 1.19
PCDHGA4Q9Y5G9 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
PCDHGA4Q9Y5G9 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PCDHGA4Q9Y5G9 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
PCDHGA4Q9Y5G9 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PCDHGA4Q9Y5G9 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PCDHGA4Q9Y5G9 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
PCDHGA4Q9Y5G9 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
PCDHGA4Q9Y5G9 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PCDHGA4Q9Y5G9 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC22.5■■□□□ 1.19
PCDHGA4Q9Y5G9 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PCDHGA4Q9Y5G9 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PCDHGA4Q9Y5G9 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
PCDHGA4Q9Y5G9 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC22.5■■□□□ 1.19
PCDHGA4Q9Y5G9 AC131281.2-201ENST00000520478 145 ntBASIC22.5■■□□□ 1.19
PCDHGA4Q9Y5G9 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC22.5■■□□□ 1.19
PCDHGA4Q9Y5G9 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC22.5■■□□□ 1.19
PCDHGA4Q9Y5G9 RALB-208ENST00000631312 311 ntTSL 5 BASIC22.5■■□□□ 1.19
PCDHGA4Q9Y5G9 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PCDHGA4Q9Y5G9 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PCDHGA4Q9Y5G9 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
PCDHGA4Q9Y5G9 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
PCDHGA4Q9Y5G9 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
PCDHGA4Q9Y5G9 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC22.49■■□□□ 1.19
PCDHGA4Q9Y5G9 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PCDHGA4Q9Y5G9 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
PCDHGA4Q9Y5G9 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PCDHGA4Q9Y5G9 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PCDHGA4Q9Y5G9 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PCDHGA4Q9Y5G9 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC22.49■■□□□ 1.19
PCDHGA4Q9Y5G9 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC22.49■■□□□ 1.19
PCDHGA4Q9Y5G9 AC079416.2-201ENST00000625035 1193 ntBASIC22.49■■□□□ 1.19
PCDHGA4Q9Y5G9 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC22.49■■□□□ 1.19
PCDHGA4Q9Y5G9 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC22.49■■□□□ 1.19
PCDHGA4Q9Y5G9 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHGA4Q9Y5G9 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHGA4Q9Y5G9 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHGA4Q9Y5G9 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC22.48■■□□□ 1.19
PCDHGA4Q9Y5G9 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHGA4Q9Y5G9 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHGA4Q9Y5G9 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC22.48■■□□□ 1.19
PCDHGA4Q9Y5G9 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHGA4Q9Y5G9 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
PCDHGA4Q9Y5G9 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHGA4Q9Y5G9 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHGA4Q9Y5G9 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDHGA4Q9Y5G9 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PCDHGA4Q9Y5G9 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PCDHGA4Q9Y5G9 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
PCDHGA4Q9Y5G9 RPP21-222ENST00000433076 577 ntTSL 2 BASIC22.47■■□□□ 1.19
PCDHGA4Q9Y5G9 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC22.47■■□□□ 1.19
PCDHGA4Q9Y5G9 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
PCDHGA4Q9Y5G9 SSSCA1-AS1-201ENST00000567594 614 ntBASIC22.47■■□□□ 1.19
PCDHGA4Q9Y5G9 AC092028.1-203ENST00000608262 953 ntBASIC22.47■■□□□ 1.19
PCDHGA4Q9Y5G9 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PCDHGA4Q9Y5G9 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC22.47■■□□□ 1.19
PCDHGA4Q9Y5G9 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
PCDHGA4Q9Y5G9 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC22.47■■□□□ 1.19
PCDHGA4Q9Y5G9 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
PCDHGA4Q9Y5G9 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
PCDHGA4Q9Y5G9 AC142381.3-201ENST00000568208 1670 ntBASIC22.46■■□□□ 1.19
PCDHGA4Q9Y5G9 SRR-208ENST00000576848 588 ntTSL 4 BASIC22.46■■□□□ 1.19
PCDHGA4Q9Y5G9 MIR6089-201ENST00000616698 64 ntBASIC22.46■■□□□ 1.19
PCDHGA4Q9Y5G9 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC22.46■■□□□ 1.19
PCDHGA4Q9Y5G9 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
PCDHGA4Q9Y5G9 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC22.46■■□□□ 1.19
PCDHGA4Q9Y5G9 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
PCDHGA4Q9Y5G9 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
PCDHGA4Q9Y5G9 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PCDHGA4Q9Y5G9 AC079834.2-201ENST00000609776 1949 ntBASIC22.45■■□□□ 1.18
PCDHGA4Q9Y5G9 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PCDHGA4Q9Y5G9 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC22.45■■□□□ 1.18
PCDHGA4Q9Y5G9 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
PCDHGA4Q9Y5G9 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PCDHGA4Q9Y5G9 AC012676.1-201ENST00000574705 1949 ntBASIC22.45■■□□□ 1.18
PCDHGA4Q9Y5G9 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC22.44■■□□□ 1.18
PCDHGA4Q9Y5G9 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
PCDHGA4Q9Y5G9 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
PCDHGA4Q9Y5G9 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
PCDHGA4Q9Y5G9 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC22.44■■□□□ 1.18
PCDHGA4Q9Y5G9 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 12.2 ms