Protein–RNA interactions for Protein: Q9Y5G4

PCDHGA9, Protocadherin gamma-A9, humanhuman

Known RBP Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA9Q9Y5G4 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHGA9Q9Y5G4 SUDS3P1-201ENST00000505831 966 ntBASIC21.48■■□□□ 1.03
PCDHGA9Q9Y5G4 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHGA9Q9Y5G4 RARRES2P6-201ENST00000567333 442 ntBASIC21.48■■□□□ 1.03
PCDHGA9Q9Y5G4 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.48■■□□□ 1.03
PCDHGA9Q9Y5G4 AL136162.1-201ENST00000607711 1078 ntBASIC21.48■■□□□ 1.03
PCDHGA9Q9Y5G4 AC135279.3-201ENST00000610945 1311 ntBASIC21.48■■□□□ 1.03
PCDHGA9Q9Y5G4 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHGA9Q9Y5G4 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.48■■□□□ 1.03
PCDHGA9Q9Y5G4 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHGA9Q9Y5G4 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC21.48■■□□□ 1.03
PCDHGA9Q9Y5G4 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHGA9Q9Y5G4 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHGA9Q9Y5G4 EDA-201ENST00000338901 1233 ntBASIC21.47■■□□□ 1.03
PCDHGA9Q9Y5G4 AL031432.3-201ENST00000607698 485 ntBASIC21.47■■□□□ 1.03
PCDHGA9Q9Y5G4 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
PCDHGA9Q9Y5G4 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
PCDHGA9Q9Y5G4 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.46■■□□□ 1.03
PCDHGA9Q9Y5G4 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHGA9Q9Y5G4 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.46■■□□□ 1.03
PCDHGA9Q9Y5G4 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.46■■□□□ 1.03
PCDHGA9Q9Y5G4 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHGA9Q9Y5G4 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHGA9Q9Y5G4 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHGA9Q9Y5G4 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.46■■□□□ 1.03
PCDHGA9Q9Y5G4 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
PCDHGA9Q9Y5G4 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHGA9Q9Y5G4 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHGA9Q9Y5G4 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHGA9Q9Y5G4 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHGA9Q9Y5G4 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHGA9Q9Y5G4 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHGA9Q9Y5G4 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.45■■□□□ 1.02
PCDHGA9Q9Y5G4 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHGA9Q9Y5G4 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
PCDHGA9Q9Y5G4 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
PCDHGA9Q9Y5G4 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
PCDHGA9Q9Y5G4 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC21.44■■□□□ 1.02
PCDHGA9Q9Y5G4 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.44■■□□□ 1.02
PCDHGA9Q9Y5G4 AL355001.2-201ENST00000620617 1191 ntBASIC21.44■■□□□ 1.02
PCDHGA9Q9Y5G4 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.44■■□□□ 1.02
PCDHGA9Q9Y5G4 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHGA9Q9Y5G4 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHGA9Q9Y5G4 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHGA9Q9Y5G4 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.43■■□□□ 1.02
PCDHGA9Q9Y5G4 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.43■■□□□ 1.02
PCDHGA9Q9Y5G4 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
PCDHGA9Q9Y5G4 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHGA9Q9Y5G4 AC097639.1-201ENST00000565519 1891 ntBASIC21.43■■□□□ 1.02
PCDHGA9Q9Y5G4 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PCDHGA9Q9Y5G4 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PCDHGA9Q9Y5G4 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PCDHGA9Q9Y5G4 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PCDHGA9Q9Y5G4 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PCDHGA9Q9Y5G4 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.42■■□□□ 1.02
PCDHGA9Q9Y5G4 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PCDHGA9Q9Y5G4 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.42■■□□□ 1.02
PCDHGA9Q9Y5G4 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PCDHGA9Q9Y5G4 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHGA9Q9Y5G4 DUX4L19-201ENST00000557448 1267 ntBASIC21.41■■□□□ 1.02
PCDHGA9Q9Y5G4 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHGA9Q9Y5G4 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.41■■□□□ 1.02
PCDHGA9Q9Y5G4 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCDHGA9Q9Y5G4 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.4■■□□□ 1.02
PCDHGA9Q9Y5G4 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
PCDHGA9Q9Y5G4 AC004448.1-201ENST00000458332 883 ntBASIC21.4■■□□□ 1.02
PCDHGA9Q9Y5G4 AC024257.2-201ENST00000549699 147 ntBASIC21.4■■□□□ 1.02
PCDHGA9Q9Y5G4 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.4■■□□□ 1.02
PCDHGA9Q9Y5G4 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.4■■□□□ 1.02
PCDHGA9Q9Y5G4 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCDHGA9Q9Y5G4 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
PCDHGA9Q9Y5G4 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.39■■□□□ 1.02
PCDHGA9Q9Y5G4 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.39■■□□□ 1.02
PCDHGA9Q9Y5G4 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
PCDHGA9Q9Y5G4 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCDHGA9Q9Y5G4 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
PCDHGA9Q9Y5G4 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCDHGA9Q9Y5G4 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCDHGA9Q9Y5G4 AC026271.2-201ENST00000428091 497 ntBASIC21.39■■□□□ 1.01
PCDHGA9Q9Y5G4 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCDHGA9Q9Y5G4 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCDHGA9Q9Y5G4 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
PCDHGA9Q9Y5G4 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHGA9Q9Y5G4 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.38■■□□□ 1.01
PCDHGA9Q9Y5G4 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHGA9Q9Y5G4 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHGA9Q9Y5G4 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.38■■□□□ 1.01
PCDHGA9Q9Y5G4 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.38■■□□□ 1.01
PCDHGA9Q9Y5G4 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
PCDHGA9Q9Y5G4 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHGA9Q9Y5G4 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHGA9Q9Y5G4 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHGA9Q9Y5G4 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.37■■□□□ 1.01
PCDHGA9Q9Y5G4 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHGA9Q9Y5G4 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHGA9Q9Y5G4 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHGA9Q9Y5G4 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.37■■□□□ 1.01
PCDHGA9Q9Y5G4 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.37■■□□□ 1.01
PCDHGA9Q9Y5G4 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PCDHGA9Q9Y5G4 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms