Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
TM9SF3Q9HD45 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
TM9SF3Q9HD45 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.01■■□□□ 1.27
TM9SF3Q9HD45 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
TM9SF3Q9HD45 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
TM9SF3Q9HD45 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC23■■□□□ 1.27
TM9SF3Q9HD45 SRD5A1P1-201ENST00000442297 786 ntBASIC23■■□□□ 1.27
TM9SF3Q9HD45 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC23■■□□□ 1.27
TM9SF3Q9HD45 AC004448.1-201ENST00000458332 883 ntBASIC23■■□□□ 1.27
TM9SF3Q9HD45 AC142381.2-201ENST00000566120 298 ntBASIC23■■□□□ 1.27
TM9SF3Q9HD45 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23■■□□□ 1.27
TM9SF3Q9HD45 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC22.99■■□□□ 1.27
TM9SF3Q9HD45 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC22.99■■□□□ 1.27
TM9SF3Q9HD45 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC22.99■■□□□ 1.27
TM9SF3Q9HD45 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC22.99■■□□□ 1.27
TM9SF3Q9HD45 GUK1-205ENST00000366722 850 ntTSL 3 BASIC22.99■■□□□ 1.27
TM9SF3Q9HD45 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
TM9SF3Q9HD45 AL136162.1-201ENST00000607711 1078 ntBASIC22.99■■□□□ 1.27
TM9SF3Q9HD45 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
TM9SF3Q9HD45 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC22.98■■□□□ 1.27
TM9SF3Q9HD45 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
TM9SF3Q9HD45 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC22.98■■□□□ 1.27
TM9SF3Q9HD45 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC22.97■■□□□ 1.27
TM9SF3Q9HD45 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
TM9SF3Q9HD45 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC22.97■■□□□ 1.27
TM9SF3Q9HD45 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
TM9SF3Q9HD45 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
TM9SF3Q9HD45 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
TM9SF3Q9HD45 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
TM9SF3Q9HD45 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
TM9SF3Q9HD45 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
TM9SF3Q9HD45 ZNRF2P3-201ENST00000424200 374 ntBASIC22.96■■□□□ 1.27
TM9SF3Q9HD45 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC22.96■■□□□ 1.27
TM9SF3Q9HD45 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC22.96■■□□□ 1.27
TM9SF3Q9HD45 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
TM9SF3Q9HD45 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
TM9SF3Q9HD45 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
TM9SF3Q9HD45 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
TM9SF3Q9HD45 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
TM9SF3Q9HD45 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
TM9SF3Q9HD45 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC22.95■■□□□ 1.26
TM9SF3Q9HD45 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
TM9SF3Q9HD45 AL031432.3-201ENST00000607698 485 ntBASIC22.95■■□□□ 1.26
TM9SF3Q9HD45 AC135279.3-201ENST00000610945 1311 ntBASIC22.95■■□□□ 1.26
TM9SF3Q9HD45 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC22.94■■□□□ 1.26
TM9SF3Q9HD45 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
TM9SF3Q9HD45 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC22.94■■□□□ 1.26
TM9SF3Q9HD45 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
TM9SF3Q9HD45 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC22.94■■□□□ 1.26
TM9SF3Q9HD45 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC22.94■■□□□ 1.26
TM9SF3Q9HD45 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC22.94■■□□□ 1.26
TM9SF3Q9HD45 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC22.94■■□□□ 1.26
TM9SF3Q9HD45 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
TM9SF3Q9HD45 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC22.93■■□□□ 1.26
TM9SF3Q9HD45 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
TM9SF3Q9HD45 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC22.93■■□□□ 1.26
TM9SF3Q9HD45 SUDS3P1-201ENST00000505831 966 ntBASIC22.93■■□□□ 1.26
TM9SF3Q9HD45 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC22.93■■□□□ 1.26
TM9SF3Q9HD45 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
TM9SF3Q9HD45 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC22.93■■□□□ 1.26
TM9SF3Q9HD45 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
TM9SF3Q9HD45 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC22.93■■□□□ 1.26
TM9SF3Q9HD45 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
TM9SF3Q9HD45 GATM-206ENST00000558336 1522 ntTSL 2 BASIC22.92■■□□□ 1.26
TM9SF3Q9HD45 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC22.92■■□□□ 1.26
TM9SF3Q9HD45 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
TM9SF3Q9HD45 AC005703.6-201ENST00000623265 1329 ntBASIC22.92■■□□□ 1.26
TM9SF3Q9HD45 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
TM9SF3Q9HD45 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
TM9SF3Q9HD45 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC22.92■■□□□ 1.26
TM9SF3Q9HD45 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
TM9SF3Q9HD45 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
TM9SF3Q9HD45 AC024257.2-201ENST00000549699 147 ntBASIC22.92■■□□□ 1.26
TM9SF3Q9HD45 AC093323.1-202ENST00000635031 2045 ntBASIC22.92■■□□□ 1.26
TM9SF3Q9HD45 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
TM9SF3Q9HD45 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
TM9SF3Q9HD45 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
TM9SF3Q9HD45 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC22.91■■□□□ 1.26
TM9SF3Q9HD45 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
TM9SF3Q9HD45 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
TM9SF3Q9HD45 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
TM9SF3Q9HD45 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.91■■□□□ 1.26
TM9SF3Q9HD45 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
TM9SF3Q9HD45 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
TM9SF3Q9HD45 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
TM9SF3Q9HD45 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC22.91■■□□□ 1.26
TM9SF3Q9HD45 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC22.91■■□□□ 1.26
TM9SF3Q9HD45 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
TM9SF3Q9HD45 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC22.9■■□□□ 1.26
TM9SF3Q9HD45 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
TM9SF3Q9HD45 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
TM9SF3Q9HD45 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
TM9SF3Q9HD45 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
TM9SF3Q9HD45 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC22.9■■□□□ 1.26
TM9SF3Q9HD45 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.26
TM9SF3Q9HD45 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
TM9SF3Q9HD45 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
TM9SF3Q9HD45 EDA-201ENST00000338901 1233 ntBASIC22.89■■□□□ 1.25
TM9SF3Q9HD45 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.25
TM9SF3Q9HD45 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms