Protein–RNA interactions for Protein: Q9H0F5

RNF38, E3 ubiquitin-protein ligase RNF38, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38Q9H0F5 HLA-L-211ENST00000482052 1765 ntBASIC23.96■■□□□ 1.43
RNF38Q9H0F5 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC23.96■■□□□ 1.43
RNF38Q9H0F5 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
RNF38Q9H0F5 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
RNF38Q9H0F5 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC23.96■■□□□ 1.43
RNF38Q9H0F5 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
RNF38Q9H0F5 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC23.96■■□□□ 1.43
RNF38Q9H0F5 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
RNF38Q9H0F5 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
RNF38Q9H0F5 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC23.96■■□□□ 1.43
RNF38Q9H0F5 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
RNF38Q9H0F5 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
RNF38Q9H0F5 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC23.95■■□□□ 1.43
RNF38Q9H0F5 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
RNF38Q9H0F5 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
RNF38Q9H0F5 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC23.95■■□□□ 1.42
RNF38Q9H0F5 MIR638-201ENST00000385237 100 ntBASIC23.95■■□□□ 1.42
RNF38Q9H0F5 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
RNF38Q9H0F5 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC23.95■■□□□ 1.42
RNF38Q9H0F5 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC23.95■■□□□ 1.42
RNF38Q9H0F5 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
RNF38Q9H0F5 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
RNF38Q9H0F5 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC23.95■■□□□ 1.42
RNF38Q9H0F5 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC23.94■■□□□ 1.42
RNF38Q9H0F5 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.94■■□□□ 1.42
RNF38Q9H0F5 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
RNF38Q9H0F5 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
RNF38Q9H0F5 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.94■■□□□ 1.42
RNF38Q9H0F5 REST-206ENST00000612429 1376 ntTSL 5 BASIC23.94■■□□□ 1.42
RNF38Q9H0F5 REST-207ENST00000616975 1370 ntTSL 5 BASIC23.94■■□□□ 1.42
RNF38Q9H0F5 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
RNF38Q9H0F5 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC23.94■■□□□ 1.42
RNF38Q9H0F5 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC23.94■■□□□ 1.42
RNF38Q9H0F5 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
RNF38Q9H0F5 AC005703.6-201ENST00000623265 1329 ntBASIC23.94■■□□□ 1.42
RNF38Q9H0F5 STK32C-205ENST00000456004 607 ntTSL 2 BASIC23.94■■□□□ 1.42
RNF38Q9H0F5 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC23.94■■□□□ 1.42
RNF38Q9H0F5 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
RNF38Q9H0F5 AC110285.6-201ENST00000617652 491 ntBASIC23.94■■□□□ 1.42
RNF38Q9H0F5 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
RNF38Q9H0F5 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
RNF38Q9H0F5 AL022069.1-201ENST00000568025 1636 ntBASIC23.94■■□□□ 1.42
RNF38Q9H0F5 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
RNF38Q9H0F5 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC23.93■■□□□ 1.42
RNF38Q9H0F5 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
RNF38Q9H0F5 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
RNF38Q9H0F5 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
RNF38Q9H0F5 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
RNF38Q9H0F5 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC23.93■■□□□ 1.42
RNF38Q9H0F5 AC096631.2-201ENST00000436136 790 ntBASIC23.93■■□□□ 1.42
RNF38Q9H0F5 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC23.93■■□□□ 1.42
RNF38Q9H0F5 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
RNF38Q9H0F5 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC23.93■■□□□ 1.42
RNF38Q9H0F5 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
RNF38Q9H0F5 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
RNF38Q9H0F5 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
RNF38Q9H0F5 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
RNF38Q9H0F5 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC23.92■■□□□ 1.42
RNF38Q9H0F5 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
RNF38Q9H0F5 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
RNF38Q9H0F5 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
RNF38Q9H0F5 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
RNF38Q9H0F5 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC23.91■■□□□ 1.42
RNF38Q9H0F5 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC23.91■■□□□ 1.42
RNF38Q9H0F5 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
RNF38Q9H0F5 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
RNF38Q9H0F5 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
RNF38Q9H0F5 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
RNF38Q9H0F5 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
RNF38Q9H0F5 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC23.9■■□□□ 1.42
RNF38Q9H0F5 RALB-208ENST00000631312 311 ntTSL 5 BASIC23.9■■□□□ 1.42
RNF38Q9H0F5 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
RNF38Q9H0F5 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
RNF38Q9H0F5 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC23.9■■□□□ 1.42
RNF38Q9H0F5 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC23.89■■□□□ 1.42
RNF38Q9H0F5 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
RNF38Q9H0F5 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
RNF38Q9H0F5 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
RNF38Q9H0F5 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
RNF38Q9H0F5 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
RNF38Q9H0F5 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC23.89■■□□□ 1.41
RNF38Q9H0F5 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC23.89■■□□□ 1.41
RNF38Q9H0F5 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC23.89■■□□□ 1.41
RNF38Q9H0F5 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
RNF38Q9H0F5 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
RNF38Q9H0F5 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC23.88■■□□□ 1.41
RNF38Q9H0F5 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
RNF38Q9H0F5 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
RNF38Q9H0F5 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC23.88■■□□□ 1.41
RNF38Q9H0F5 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
RNF38Q9H0F5 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC23.87■■□□□ 1.41
RNF38Q9H0F5 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
RNF38Q9H0F5 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
RNF38Q9H0F5 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
RNF38Q9H0F5 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
RNF38Q9H0F5 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
RNF38Q9H0F5 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC23.87■■□□□ 1.41
RNF38Q9H0F5 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC23.87■■□□□ 1.41
RNF38Q9H0F5 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
RNF38Q9H0F5 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms