Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CLRN3Q8NCR9 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLRN3Q8NCR9 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC18.37■□□□□ 0.53
CLRN3Q8NCR9 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLRN3Q8NCR9 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CLRN3Q8NCR9 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CLRN3Q8NCR9 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
CLRN3Q8NCR9 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CLRN3Q8NCR9 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CLRN3Q8NCR9 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC18.37■□□□□ 0.53
CLRN3Q8NCR9 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC18.37■□□□□ 0.53
CLRN3Q8NCR9 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CLRN3Q8NCR9 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLRN3Q8NCR9 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLRN3Q8NCR9 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLRN3Q8NCR9 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CLRN3Q8NCR9 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLRN3Q8NCR9 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CLRN3Q8NCR9 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC18.36■□□□□ 0.53
CLRN3Q8NCR9 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLRN3Q8NCR9 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLRN3Q8NCR9 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.35■□□□□ 0.53
CLRN3Q8NCR9 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLRN3Q8NCR9 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLRN3Q8NCR9 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC18.35■□□□□ 0.53
CLRN3Q8NCR9 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLRN3Q8NCR9 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLRN3Q8NCR9 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC18.35■□□□□ 0.53
CLRN3Q8NCR9 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CLRN3Q8NCR9 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
CLRN3Q8NCR9 SHD-204ENST00000599689 1729 ntTSL 5 BASIC18.35■□□□□ 0.53
CLRN3Q8NCR9 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLRN3Q8NCR9 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.34■□□□□ 0.53
CLRN3Q8NCR9 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLRN3Q8NCR9 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.34■□□□□ 0.53
CLRN3Q8NCR9 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC18.34■□□□□ 0.53
CLRN3Q8NCR9 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLRN3Q8NCR9 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLRN3Q8NCR9 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC18.34■□□□□ 0.53
CLRN3Q8NCR9 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLRN3Q8NCR9 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.34■□□□□ 0.53
CLRN3Q8NCR9 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC18.34■□□□□ 0.53
CLRN3Q8NCR9 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLRN3Q8NCR9 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CLRN3Q8NCR9 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLRN3Q8NCR9 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
CLRN3Q8NCR9 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLRN3Q8NCR9 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
CLRN3Q8NCR9 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLRN3Q8NCR9 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC18.33■□□□□ 0.52
CLRN3Q8NCR9 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLRN3Q8NCR9 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLRN3Q8NCR9 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLRN3Q8NCR9 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLRN3Q8NCR9 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLRN3Q8NCR9 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLRN3Q8NCR9 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLRN3Q8NCR9 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC18.32■□□□□ 0.52
CLRN3Q8NCR9 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLRN3Q8NCR9 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CLRN3Q8NCR9 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLRN3Q8NCR9 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLRN3Q8NCR9 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLRN3Q8NCR9 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLRN3Q8NCR9 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.31■□□□□ 0.52
CLRN3Q8NCR9 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLRN3Q8NCR9 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLRN3Q8NCR9 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLRN3Q8NCR9 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLRN3Q8NCR9 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.31■□□□□ 0.52
CLRN3Q8NCR9 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLRN3Q8NCR9 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CLRN3Q8NCR9 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLRN3Q8NCR9 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLRN3Q8NCR9 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLRN3Q8NCR9 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.31■□□□□ 0.52
CLRN3Q8NCR9 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLRN3Q8NCR9 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLRN3Q8NCR9 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CLRN3Q8NCR9 AC135983.2-203ENST00000454486 1613 ntBASIC18.31■□□□□ 0.52
CLRN3Q8NCR9 SLC6A10P-202ENST00000431994 2058 ntBASIC18.3■□□□□ 0.52
CLRN3Q8NCR9 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CLRN3Q8NCR9 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLRN3Q8NCR9 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLRN3Q8NCR9 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CLRN3Q8NCR9 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CLRN3Q8NCR9 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC18.3■□□□□ 0.52
CLRN3Q8NCR9 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLRN3Q8NCR9 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.3■□□□□ 0.52
CLRN3Q8NCR9 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
CLRN3Q8NCR9 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLRN3Q8NCR9 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLRN3Q8NCR9 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.3■□□□□ 0.52
CLRN3Q8NCR9 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLRN3Q8NCR9 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLRN3Q8NCR9 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLRN3Q8NCR9 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CLRN3Q8NCR9 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC18.29■□□□□ 0.52
CLRN3Q8NCR9 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLRN3Q8NCR9 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms