Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SLC44A3Q8N4M1 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC23.76■■□□□ 1.39
SLC44A3Q8N4M1 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SLC44A3Q8N4M1 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
SLC44A3Q8N4M1 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
SLC44A3Q8N4M1 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
SLC44A3Q8N4M1 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
SLC44A3Q8N4M1 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC23.75■■□□□ 1.39
SLC44A3Q8N4M1 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SLC44A3Q8N4M1 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SLC44A3Q8N4M1 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SLC44A3Q8N4M1 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SLC44A3Q8N4M1 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
SLC44A3Q8N4M1 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SLC44A3Q8N4M1 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC23.74■■□□□ 1.39
SLC44A3Q8N4M1 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SLC44A3Q8N4M1 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SLC44A3Q8N4M1 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SLC44A3Q8N4M1 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC23.74■■□□□ 1.39
SLC44A3Q8N4M1 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SLC44A3Q8N4M1 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SLC44A3Q8N4M1 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SLC44A3Q8N4M1 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
SLC44A3Q8N4M1 AC009102.2-201ENST00000606772 1639 ntBASIC23.73■■□□□ 1.39
SLC44A3Q8N4M1 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC23.73■■□□□ 1.39
SLC44A3Q8N4M1 HES6-206ENST00000409574 738 ntTSL 2 BASIC23.73■■□□□ 1.39
SLC44A3Q8N4M1 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC23.73■■□□□ 1.39
SLC44A3Q8N4M1 AC131274.2-201ENST00000580697 1507 ntBASIC23.73■■□□□ 1.39
SLC44A3Q8N4M1 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SLC44A3Q8N4M1 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SLC44A3Q8N4M1 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC23.72■■□□□ 1.39
SLC44A3Q8N4M1 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
SLC44A3Q8N4M1 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC23.72■■□□□ 1.39
SLC44A3Q8N4M1 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
SLC44A3Q8N4M1 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC23.71■■□□□ 1.39
SLC44A3Q8N4M1 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SLC44A3Q8N4M1 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC23.71■■□□□ 1.39
SLC44A3Q8N4M1 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC23.71■■□□□ 1.39
SLC44A3Q8N4M1 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
SLC44A3Q8N4M1 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
SLC44A3Q8N4M1 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
SLC44A3Q8N4M1 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SLC44A3Q8N4M1 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SLC44A3Q8N4M1 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC23.7■■□□□ 1.38
SLC44A3Q8N4M1 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SLC44A3Q8N4M1 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
SLC44A3Q8N4M1 SP2-202ENST00000613139 908 ntTSL 5 BASIC23.7■■□□□ 1.38
SLC44A3Q8N4M1 AC136469.2-201ENST00000623944 1028 ntBASIC23.7■■□□□ 1.38
SLC44A3Q8N4M1 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
SLC44A3Q8N4M1 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SLC44A3Q8N4M1 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SLC44A3Q8N4M1 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SLC44A3Q8N4M1 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC23.69■■□□□ 1.38
SLC44A3Q8N4M1 RARRES2P11-201ENST00000635158 484 ntBASIC23.69■■□□□ 1.38
SLC44A3Q8N4M1 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC23.69■■□□□ 1.38
SLC44A3Q8N4M1 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC23.69■■□□□ 1.38
SLC44A3Q8N4M1 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23.69■■□□□ 1.38
SLC44A3Q8N4M1 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SLC44A3Q8N4M1 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC23.69■■□□□ 1.38
SLC44A3Q8N4M1 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
SLC44A3Q8N4M1 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SLC44A3Q8N4M1 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SLC44A3Q8N4M1 STK32C-205ENST00000456004 607 ntTSL 2 BASIC23.68■■□□□ 1.38
SLC44A3Q8N4M1 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC23.68■■□□□ 1.38
SLC44A3Q8N4M1 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC23.68■■□□□ 1.38
SLC44A3Q8N4M1 AC233992.3-201ENST00000607491 485 ntBASIC23.68■■□□□ 1.38
SLC44A3Q8N4M1 AC241377.3-202ENST00000626088 1088 ntBASIC23.68■■□□□ 1.38
SLC44A3Q8N4M1 AC241585.3-202ENST00000628937 1088 ntBASIC23.68■■□□□ 1.38
SLC44A3Q8N4M1 AC245100.8-202ENST00000629247 1058 ntBASIC23.68■■□□□ 1.38
SLC44A3Q8N4M1 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SLC44A3Q8N4M1 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SLC44A3Q8N4M1 AC090192.1-201ENST00000517740 490 ntBASIC23.67■■□□□ 1.38
SLC44A3Q8N4M1 MPST-208ENST00000628507 698 ntTSL 5 BASIC23.67■■□□□ 1.38
SLC44A3Q8N4M1 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SLC44A3Q8N4M1 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
SLC44A3Q8N4M1 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SLC44A3Q8N4M1 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SLC44A3Q8N4M1 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC23.66■■□□□ 1.38
SLC44A3Q8N4M1 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SLC44A3Q8N4M1 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
SLC44A3Q8N4M1 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
SLC44A3Q8N4M1 C17orf82-201ENST00000623772 1530 ntBASIC23.66■■□□□ 1.38
SLC44A3Q8N4M1 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC23.66■■□□□ 1.38
SLC44A3Q8N4M1 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
SLC44A3Q8N4M1 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC23.66■■□□□ 1.38
SLC44A3Q8N4M1 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SLC44A3Q8N4M1 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC23.65■■□□□ 1.38
SLC44A3Q8N4M1 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SLC44A3Q8N4M1 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SLC44A3Q8N4M1 AK1-201ENST00000223836 736 ntTSL 3 BASIC23.65■■□□□ 1.38
SLC44A3Q8N4M1 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SLC44A3Q8N4M1 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SLC44A3Q8N4M1 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SLC44A3Q8N4M1 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC23.65■■□□□ 1.38
SLC44A3Q8N4M1 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC23.65■■□□□ 1.38
SLC44A3Q8N4M1 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC23.65■■□□□ 1.38
SLC44A3Q8N4M1 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
SLC44A3Q8N4M1 AC010501.1-201ENST00000606270 1962 ntBASIC23.65■■□□□ 1.38
SLC44A3Q8N4M1 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
SLC44A3Q8N4M1 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms