Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
CCDC60Q8IWA6 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC25.76■■□□□ 1.71
CCDC60Q8IWA6 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
CCDC60Q8IWA6 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC25.76■■□□□ 1.71
CCDC60Q8IWA6 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC25.76■■□□□ 1.71
CCDC60Q8IWA6 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC25.76■■□□□ 1.71
CCDC60Q8IWA6 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC25.76■■□□□ 1.71
CCDC60Q8IWA6 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC25.75■■□□□ 1.71
CCDC60Q8IWA6 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
CCDC60Q8IWA6 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC25.75■■□□□ 1.71
CCDC60Q8IWA6 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC25.75■■□□□ 1.71
CCDC60Q8IWA6 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
CCDC60Q8IWA6 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC25.75■■□□□ 1.71
CCDC60Q8IWA6 STK32C-205ENST00000456004 607 ntTSL 2 BASIC25.75■■□□□ 1.71
CCDC60Q8IWA6 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
CCDC60Q8IWA6 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC25.75■■□□□ 1.71
CCDC60Q8IWA6 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
CCDC60Q8IWA6 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
CCDC60Q8IWA6 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
CCDC60Q8IWA6 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
CCDC60Q8IWA6 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
CCDC60Q8IWA6 AL022069.1-201ENST00000568025 1636 ntBASIC25.74■■□□□ 1.71
CCDC60Q8IWA6 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC25.74■■□□□ 1.71
CCDC60Q8IWA6 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CCDC60Q8IWA6 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CCDC60Q8IWA6 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC25.74■■□□□ 1.71
CCDC60Q8IWA6 AL136116.3-201ENST00000402907 1138 ntBASIC25.74■■□□□ 1.71
CCDC60Q8IWA6 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC25.74■■□□□ 1.71
CCDC60Q8IWA6 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
CCDC60Q8IWA6 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
CCDC60Q8IWA6 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CCDC60Q8IWA6 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
CCDC60Q8IWA6 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
CCDC60Q8IWA6 AC138932.3-201ENST00000567634 1902 ntBASIC25.73■■□□□ 1.71
CCDC60Q8IWA6 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CCDC60Q8IWA6 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
CCDC60Q8IWA6 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC25.73■■□□□ 1.71
CCDC60Q8IWA6 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC25.73■■□□□ 1.71
CCDC60Q8IWA6 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC25.73■■□□□ 1.71
CCDC60Q8IWA6 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CCDC60Q8IWA6 MED17-227ENST00000640521 2047 ntTSL 5 BASIC25.73■■□□□ 1.71
CCDC60Q8IWA6 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC25.72■■□□□ 1.71
CCDC60Q8IWA6 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
CCDC60Q8IWA6 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC25.72■■□□□ 1.71
CCDC60Q8IWA6 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
CCDC60Q8IWA6 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC25.72■■□□□ 1.71
CCDC60Q8IWA6 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
CCDC60Q8IWA6 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
CCDC60Q8IWA6 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC25.71■■□□□ 1.71
CCDC60Q8IWA6 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
CCDC60Q8IWA6 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
CCDC60Q8IWA6 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
CCDC60Q8IWA6 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC25.71■■□□□ 1.71
CCDC60Q8IWA6 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
CCDC60Q8IWA6 AC142381.3-201ENST00000568208 1670 ntBASIC25.71■■□□□ 1.71
CCDC60Q8IWA6 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
CCDC60Q8IWA6 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
CCDC60Q8IWA6 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC25.7■■□□□ 1.7
CCDC60Q8IWA6 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC25.7■■□□□ 1.7
CCDC60Q8IWA6 AP003733.4-201ENST00000623785 1697 ntBASIC25.7■■□□□ 1.7
CCDC60Q8IWA6 AC135731.1-201ENST00000569415 2548 ntBASIC25.7■■□□□ 1.7
CCDC60Q8IWA6 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CCDC60Q8IWA6 REST-206ENST00000612429 1376 ntTSL 5 BASIC25.69■■□□□ 1.7
CCDC60Q8IWA6 REST-207ENST00000616975 1370 ntTSL 5 BASIC25.69■■□□□ 1.7
CCDC60Q8IWA6 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CCDC60Q8IWA6 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CCDC60Q8IWA6 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC25.69■■□□□ 1.7
CCDC60Q8IWA6 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CCDC60Q8IWA6 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC25.69■■□□□ 1.7
CCDC60Q8IWA6 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CCDC60Q8IWA6 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CCDC60Q8IWA6 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC25.69■■□□□ 1.7
CCDC60Q8IWA6 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CCDC60Q8IWA6 CD37-213ENST00000598095 1598 ntTSL 2 BASIC25.69■■□□□ 1.7
CCDC60Q8IWA6 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC60Q8IWA6 AC005703.6-201ENST00000623265 1329 ntBASIC25.68■■□□□ 1.7
CCDC60Q8IWA6 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC60Q8IWA6 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC60Q8IWA6 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC25.68■■□□□ 1.7
CCDC60Q8IWA6 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC60Q8IWA6 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC60Q8IWA6 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC60Q8IWA6 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC60Q8IWA6 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC60Q8IWA6 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC25.67■■□□□ 1.7
CCDC60Q8IWA6 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC25.67■■□□□ 1.7
CCDC60Q8IWA6 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC25.67■■□□□ 1.7
CCDC60Q8IWA6 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC60Q8IWA6 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC60Q8IWA6 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CCDC60Q8IWA6 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC25.66■■□□□ 1.7
CCDC60Q8IWA6 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC25.66■■□□□ 1.7
CCDC60Q8IWA6 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC60Q8IWA6 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC60Q8IWA6 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC60Q8IWA6 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
CCDC60Q8IWA6 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC25.66■■□□□ 1.7
CCDC60Q8IWA6 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC25.65■■□□□ 1.7
CCDC60Q8IWA6 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CCDC60Q8IWA6 TMEM202-AS1-202ENST00000565181 2325 ntBASIC25.65■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms