Protein–RNA interactions for Protein: Q01477

UBP3, Ubiquitin carboxyl-terminal hydrolase 3, yeastyeast

Known RBP RIP-Chip data

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP3Q01477 CIS3YJL158C 684 nt6.42□□□□□ -1.38
UBP3Q01477 TFA2YKR062W 987 nt6.42□□□□□ -1.38 RIP-Chip
UBP3Q01477 CSM3YMR048W 954 nt6.42□□□□□ -1.38
UBP3Q01477 YMR178WYMR178W 825 nt6.42□□□□□ -1.38
UBP3Q01477 YNL042W-BYNL042W-B 258 nt6.42□□□□□ -1.38
UBP3Q01477 LDB19YOR322C 2457 nt6.42□□□□□ -1.38 RIP-Chip
UBP3Q01477 PUS9YDL036C 1389 nt6.42□□□□□ -1.38
UBP3Q01477 CTS2YDR371W 1536 nt6.41□□□□□ -1.38
UBP3Q01477 SKS1YPL026C 1509 nt6.41□□□□□ -1.38
UBP3Q01477 TPO3YPR156C 1869 nt6.41□□□□□ -1.38
UBP3Q01477 RAD24YER173W 1980 nt6.41□□□□□ -1.38 RIP-Chip
UBP3Q01477 PRS2YER099C 957 nt6.41□□□□□ -1.38
UBP3Q01477 YGL218WYGL218W 651 nt6.41□□□□□ -1.38
UBP3Q01477 YML094C-AYML094C-A 402 nt6.41□□□□□ -1.38
UBP3Q01477 GLN1YPR035W 1113 nt6.41□□□□□ -1.38
UBP3Q01477 YMD8YML038C 1329 nt6.41□□□□□ -1.38
UBP3Q01477 TIP20YGL145W 2106 nt6.41□□□□□ -1.38
UBP3Q01477 LSG1YGL099W 1923 nt6.4□□□□□ -1.38 RIP-Chip
UBP3Q01477 FRS2YFL022C 1512 nt6.4□□□□□ -1.38
UBP3Q01477 MET3YJR010W 1536 nt6.4□□□□□ -1.38 RIP-Chip
UBP3Q01477 CNE1YAL058W 1509 nt6.4□□□□□ -1.38
UBP3Q01477 NUD1YOR373W 2556 nt6.4□□□□□ -1.38 RIP-Chip
UBP3Q01477 SIS2YKR072C 1689 nt6.4□□□□□ -1.38
UBP3Q01477 IMA5YJL216C 1746 nt6.4□□□□□ -1.38
UBP3Q01477 PPM1YDR435C 987 nt6.4□□□□□ -1.38
UBP3Q01477 YFR034W-AYFR034W-A 288 nt6.4□□□□□ -1.38
UBP3Q01477 DSD1YGL196W 1287 nt6.4□□□□□ -1.38
UBP3Q01477 YJL171CYJL171C 1191 nt6.4□□□□□ -1.38 RIP-Chip
UBP3Q01477 SPO20YMR017W 1194 nt6.4□□□□□ -1.38
UBP3Q01477 YNL134CYNL134C 1131 nt6.4□□□□□ -1.38
UBP3Q01477 RPN8YOR261C 1017 nt6.4□□□□□ -1.38
UBP3Q01477 YPL068CYPL068C 882 nt6.4□□□□□ -1.38
UBP3Q01477 IFA38YBR159W 1044 nt6.4□□□□□ -1.38
UBP3Q01477 CLP1YOR250C 1338 nt6.4□□□□□ -1.39
UBP3Q01477 MCM3YEL032W 2916 nt6.4□□□□□ -1.39
UBP3Q01477 RAD57YDR004W 1383 nt6.4□□□□□ -1.39
UBP3Q01477 YME1YPR024W 2244 nt6.4□□□□□ -1.39
UBP3Q01477 PAT1YCR077C 2391 nt6.39□□□□□ -1.39
UBP3Q01477 PMA1YGL008C 2757 nt6.39□□□□□ -1.39
UBP3Q01477 YHR137C-AYHR137C-A 651 nt6.39□□□□□ -1.39
UBP3Q01477 YLR225CYLR225C 1224 nt6.39□□□□□ -1.39
UBP3Q01477 YLR307C-AYLR307C-A 264 nt6.39□□□□□ -1.39
UBP3Q01477 HAP3YBL021C 435 nt6.39□□□□□ -1.39
UBP3Q01477 RUF5-1RUF5-1 710 nt6.39□□□□□ -1.39
UBP3Q01477 RUF5-2RUF5-2 710 nt6.39□□□□□ -1.39
UBP3Q01477 YPR015CYPR015C 744 nt6.39□□□□□ -1.39
UBP3Q01477 POP4YBR257W 840 nt6.39□□□□□ -1.39
UBP3Q01477 SHE9YDR393W 1371 nt6.39□□□□□ -1.39 RIP-Chip
UBP3Q01477 YHL012WYHL012W 1482 nt6.39□□□□□ -1.39
UBP3Q01477 KAR5YMR065W 1515 nt6.39□□□□□ -1.39
UBP3Q01477 ESC8YOL017W 2145 nt6.38□□□□□ -1.39 RIP-Chip
UBP3Q01477 AAP1YHR047C 2571 nt6.38□□□□□ -1.39
UBP3Q01477 PEX19YDL065C 1029 nt6.38□□□□□ -1.39
UBP3Q01477 YDL114WYDL114W 927 nt6.38□□□□□ -1.39
UBP3Q01477 CIN4YMR138W 576 nt6.38□□□□□ -1.39
UBP3Q01477 CSL4YNL232W 879 nt6.38□□□□□ -1.39
UBP3Q01477 MRPS12YNR036C 462 nt6.38□□□□□ -1.39
UBP3Q01477 YBR124WYBR124W 360 nt6.38□□□□□ -1.39
UBP3Q01477 SUB2YDL084W 1341 nt6.38□□□□□ -1.39
UBP3Q01477 ADE12YNL220W 1302 nt6.38□□□□□ -1.39
UBP3Q01477 YHR177WYHR177W 1362 nt6.38□□□□□ -1.39
UBP3Q01477 VMA13YPR036W 1437 nt6.38□□□□□ -1.39
UBP3Q01477 MNS1YJR131W 1650 nt6.37□□□□□ -1.39
UBP3Q01477 RPN11YFR004W 921 nt6.37□□□□□ -1.39 RIP-Chip
UBP3Q01477 LST7YGR057C 729 nt6.37□□□□□ -1.39
UBP3Q01477 HSP150YJL159W 1242 nt6.37□□□□□ -1.39
UBP3Q01477 ECM1YAL059W 639 nt6.37□□□□□ -1.39
UBP3Q01477 MRPL15YLR312W-A 762 nt6.37□□□□□ -1.39
UBP3Q01477 ECM19YLR390W 339 nt6.37□□□□□ -1.39
UBP3Q01477 PBP2YBR233W 1242 nt6.37□□□□□ -1.39
UBP3Q01477 PKC1YBL105C 3456 nt6.37□□□□□ -1.39
UBP3Q01477 BZZ1YHR114W 1902 nt6.37□□□□□ -1.39 RIP-Chip
UBP3Q01477 TGL1YKL140W 1647 nt6.36□□□□□ -1.39
UBP3Q01477 PTM1YKL039W 1572 nt6.36□□□□□ -1.39
UBP3Q01477 MLF3YNL074C 1359 nt6.36□□□□□ -1.39
UBP3Q01477 CHO1YER026C 831 nt6.36□□□□□ -1.39
UBP3Q01477 VAM7YGL212W 951 nt6.36□□□□□ -1.39
UBP3Q01477 HPM1YIL110W 1134 nt6.36□□□□□ -1.39
UBP3Q01477 RHO3YIL118W 696 nt6.36□□□□□ -1.39
UBP3Q01477 YKR047WYKR047W 306 nt6.36□□□□□ -1.39
UBP3Q01477 SEC13YLR208W 894 nt6.36□□□□□ -1.39
UBP3Q01477 YPR123CYPR123C 435 nt6.36□□□□□ -1.39
UBP3Q01477 MNN5YJL186W 1761 nt6.36□□□□□ -1.39 RIP-Chip
UBP3Q01477 KSS1YGR040W 1107 nt6.35□□□□□ -1.39
UBP3Q01477 MND2YIR025W 1107 nt6.35□□□□□ -1.39 RIP-Chip
UBP3Q01477 ELF1YKL160W 438 nt6.35□□□□□ -1.39
UBP3Q01477 RPS0BYLR048W 759 nt6.35□□□□□ -1.39 RIP-Chip
UBP3Q01477 YOL163WYOL163W 510 nt6.35□□□□□ -1.39
UBP3Q01477 COQ6YGR255C 1440 nt6.34□□□□□ -1.39
UBP3Q01477 PYC1YGL062W 3537 nt6.34□□□□□ -1.39
UBP3Q01477 HMRA1YCR097W 381 nt6.34□□□□□ -1.39
UBP3Q01477 LUC7YDL087C 786 nt6.34□□□□□ -1.39
UBP3Q01477 LEU5YHR002W 1074 nt6.34□□□□□ -1.39
UBP3Q01477 CIA2YHR122W 696 nt6.34□□□□□ -1.39
UBP3Q01477 IBD2YNL164C 1056 nt6.34□□□□□ -1.39
UBP3Q01477 YOR062CYOR062C 807 nt6.34□□□□□ -1.39
UBP3Q01477 CWC27YPL064C 906 nt6.34□□□□□ -1.39
UBP3Q01477 CBP6YBR120C 489 nt6.34□□□□□ -1.39
UBP3Q01477 HAS1YMR290C 1518 nt6.34□□□□□ -1.39 RIP-Chip
UBP3Q01477 RRI1YDL216C 1323 nt6.33□□□□□ -1.4 RIP-Chip
Retrieved 100 of 7,029 protein–RNA pairs in 21.7 ms