Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDX1P47902 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CDX1P47902 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDX1P47902 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDX1P47902 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC18.53■□□□□ 0.56
CDX1P47902 C9orf163-202ENST00000624034 2573 ntBASIC18.53■□□□□ 0.56
CDX1P47902 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CDX1P47902 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDX1P47902 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDX1P47902 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CDX1P47902 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDX1P47902 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC18.53■□□□□ 0.56
CDX1P47902 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDX1P47902 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDX1P47902 AC138932.3-201ENST00000567634 1902 ntBASIC18.53■□□□□ 0.56
CDX1P47902 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CDX1P47902 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC18.52■□□□□ 0.56
CDX1P47902 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDX1P47902 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDX1P47902 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CDX1P47902 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
CDX1P47902 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDX1P47902 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDX1P47902 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDX1P47902 AL117328.2-201ENST00000624617 1940 ntBASIC18.52■□□□□ 0.56
CDX1P47902 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDX1P47902 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC18.51■□□□□ 0.55
CDX1P47902 AC097639.1-201ENST00000565519 1891 ntBASIC18.51■□□□□ 0.55
CDX1P47902 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CDX1P47902 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CDX1P47902 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC18.5■□□□□ 0.55
CDX1P47902 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC18.5■□□□□ 0.55
CDX1P47902 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDX1P47902 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CDX1P47902 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC18.5■□□□□ 0.55
CDX1P47902 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDX1P47902 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CDX1P47902 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDX1P47902 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC18.5■□□□□ 0.55
CDX1P47902 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC18.5■□□□□ 0.55
CDX1P47902 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC18.5■□□□□ 0.55
CDX1P47902 LINC00565-201ENST00000562710 2331 ntBASIC18.5■□□□□ 0.55
CDX1P47902 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC18.49■□□□□ 0.55
CDX1P47902 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC18.49■□□□□ 0.55
CDX1P47902 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
CDX1P47902 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDX1P47902 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
CDX1P47902 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
CDX1P47902 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CDX1P47902 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDX1P47902 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CDX1P47902 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC18.49■□□□□ 0.55
CDX1P47902 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDX1P47902 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDX1P47902 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDX1P47902 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC18.49■□□□□ 0.55
CDX1P47902 ABCB10P4-201ENST00000566803 2184 ntBASIC18.49■□□□□ 0.55
CDX1P47902 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDX1P47902 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDX1P47902 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CDX1P47902 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CDX1P47902 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.48■□□□□ 0.55
CDX1P47902 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDX1P47902 AC103724.3-201ENST00000564481 992 ntBASIC18.48■□□□□ 0.55
CDX1P47902 AL451085.2-201ENST00000605085 799 ntBASIC18.48■□□□□ 0.55
CDX1P47902 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDX1P47902 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDX1P47902 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDX1P47902 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CDX1P47902 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CDX1P47902 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDX1P47902 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDX1P47902 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC18.47■□□□□ 0.55
CDX1P47902 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDX1P47902 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CDX1P47902 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC18.47■□□□□ 0.55
CDX1P47902 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC18.47■□□□□ 0.55
CDX1P47902 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CDX1P47902 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDX1P47902 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDX1P47902 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDX1P47902 C1orf229-201ENST00000623686 2258 ntBASIC18.47■□□□□ 0.55
CDX1P47902 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDX1P47902 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.46■□□□□ 0.55
CDX1P47902 ME2-208ENST00000638937 2471 ntTSL 5 BASIC18.46■□□□□ 0.55
CDX1P47902 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDX1P47902 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDX1P47902 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC18.46■□□□□ 0.55
CDX1P47902 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC18.46■□□□□ 0.55
CDX1P47902 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CDX1P47902 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDX1P47902 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDX1P47902 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CDX1P47902 AL031848.2-201ENST00000607670 837 ntBASIC18.46■□□□□ 0.55
CDX1P47902 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC18.46■□□□□ 0.55
CDX1P47902 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
CDX1P47902 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC18.46■□□□□ 0.55
CDX1P47902 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC18.46■□□□□ 0.55
CDX1P47902 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDX1P47902 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms