Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC20.48■□□□□ 0.87
LIMS3P0CW19 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIMS3P0CW19 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIMS3P0CW19 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LIMS3P0CW19 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LIMS3P0CW19 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.48■□□□□ 0.87
LIMS3P0CW19 LINC00565-201ENST00000562710 2331 ntBASIC20.48■□□□□ 0.87
LIMS3P0CW19 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
LIMS3P0CW19 C1orf229-201ENST00000623686 2258 ntBASIC20.47■□□□□ 0.87
LIMS3P0CW19 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LIMS3P0CW19 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LIMS3P0CW19 ECEL1P2-201ENST00000461596 1295 ntBASIC20.47■□□□□ 0.87
LIMS3P0CW19 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LIMS3P0CW19 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
LIMS3P0CW19 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIMS3P0CW19 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIMS3P0CW19 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
LIMS3P0CW19 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
LIMS3P0CW19 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIMS3P0CW19 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIMS3P0CW19 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
LIMS3P0CW19 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIMS3P0CW19 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIMS3P0CW19 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.45■□□□□ 0.86
LIMS3P0CW19 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIMS3P0CW19 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIMS3P0CW19 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LIMS3P0CW19 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
LIMS3P0CW19 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LIMS3P0CW19 KRT18P10-201ENST00000388836 1287 ntBASIC20.45■□□□□ 0.86
LIMS3P0CW19 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIMS3P0CW19 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
LIMS3P0CW19 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LIMS3P0CW19 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.44■□□□□ 0.86
LIMS3P0CW19 ABHD17AP4-201ENST00000411545 909 ntBASIC20.44■□□□□ 0.86
LIMS3P0CW19 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC20.44■□□□□ 0.86
LIMS3P0CW19 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
LIMS3P0CW19 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIMS3P0CW19 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.44■□□□□ 0.86
LIMS3P0CW19 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.44■□□□□ 0.86
LIMS3P0CW19 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMS3P0CW19 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIMS3P0CW19 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMS3P0CW19 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIMS3P0CW19 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMS3P0CW19 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIMS3P0CW19 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMS3P0CW19 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIMS3P0CW19 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
LIMS3P0CW19 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMS3P0CW19 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIMS3P0CW19 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIMS3P0CW19 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIMS3P0CW19 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMS3P0CW19 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMS3P0CW19 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMS3P0CW19 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
LIMS3P0CW19 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
LIMS3P0CW19 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIMS3P0CW19 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LIMS3P0CW19 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
LIMS3P0CW19 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20.42■□□□□ 0.86
LIMS3P0CW19 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LIMS3P0CW19 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.42■□□□□ 0.86
LIMS3P0CW19 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
LIMS3P0CW19 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LIMS3P0CW19 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LIMS3P0CW19 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.42■□□□□ 0.86
LIMS3P0CW19 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
LIMS3P0CW19 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMS3P0CW19 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMS3P0CW19 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMS3P0CW19 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.42■□□□□ 0.86
LIMS3P0CW19 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LIMS3P0CW19 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIMS3P0CW19 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIMS3P0CW19 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
LIMS3P0CW19 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC20.41■□□□□ 0.86
LIMS3P0CW19 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC20.41■□□□□ 0.86
LIMS3P0CW19 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
LIMS3P0CW19 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIMS3P0CW19 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
LIMS3P0CW19 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIMS3P0CW19 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
LIMS3P0CW19 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
LIMS3P0CW19 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIMS3P0CW19 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIMS3P0CW19 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIMS3P0CW19 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.41■□□□□ 0.86
LIMS3P0CW19 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
LIMS3P0CW19 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIMS3P0CW19 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIMS3P0CW19 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIMS3P0CW19 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
LIMS3P0CW19 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIMS3P0CW19 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.4■□□□□ 0.86
LIMS3P0CW19 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIMS3P0CW19 RAP2CP1-202ENST00000605179 643 ntBASIC20.4■□□□□ 0.86
LIMS3P0CW19 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
LIMS3P0CW19 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms