Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
HOXD4P09016 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.79■□□□□ 0.92
HOXD4P09016 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HOXD4P09016 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.79■□□□□ 0.92
HOXD4P09016 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.79■□□□□ 0.92
HOXD4P09016 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
HOXD4P09016 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXD4P09016 AC092803.2-201ENST00000564287 1899 ntBASIC20.78■□□□□ 0.92
HOXD4P09016 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC20.78■□□□□ 0.92
HOXD4P09016 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC20.78■□□□□ 0.92
HOXD4P09016 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXD4P09016 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
HOXD4P09016 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.78■□□□□ 0.92
HOXD4P09016 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HOXD4P09016 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.78■□□□□ 0.92
HOXD4P09016 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HOXD4P09016 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HOXD4P09016 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
HOXD4P09016 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXD4P09016 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXD4P09016 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HOXD4P09016 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.77■□□□□ 0.92
HOXD4P09016 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.77■□□□□ 0.92
HOXD4P09016 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.77■□□□□ 0.92
HOXD4P09016 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC20.77■□□□□ 0.92
HOXD4P09016 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
HOXD4P09016 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HOXD4P09016 AC012676.1-201ENST00000574705 1949 ntBASIC20.76■□□□□ 0.91
HOXD4P09016 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HOXD4P09016 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HOXD4P09016 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
HOXD4P09016 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.76■□□□□ 0.91
HOXD4P09016 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.76■□□□□ 0.91
HOXD4P09016 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
HOXD4P09016 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
HOXD4P09016 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
HOXD4P09016 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
HOXD4P09016 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HOXD4P09016 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HOXD4P09016 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC20.75■□□□□ 0.91
HOXD4P09016 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXD4P09016 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXD4P09016 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.75■□□□□ 0.91
HOXD4P09016 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HOXD4P09016 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
HOXD4P09016 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXD4P09016 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
HOXD4P09016 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXD4P09016 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXD4P09016 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXD4P09016 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXD4P09016 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXD4P09016 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.74■□□□□ 0.91
HOXD4P09016 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.74■□□□□ 0.91
HOXD4P09016 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXD4P09016 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HOXD4P09016 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXD4P09016 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.73■□□□□ 0.91
HOXD4P09016 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXD4P09016 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HOXD4P09016 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.73■□□□□ 0.91
HOXD4P09016 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXD4P09016 AC091060.1-201ENST00000623524 1766 ntBASIC20.73■□□□□ 0.91
HOXD4P09016 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.73■□□□□ 0.91
HOXD4P09016 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.73■□□□□ 0.91
HOXD4P09016 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.73■□□□□ 0.91
HOXD4P09016 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HOXD4P09016 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HOXD4P09016 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HOXD4P09016 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HOXD4P09016 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
HOXD4P09016 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HOXD4P09016 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HOXD4P09016 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HOXD4P09016 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HOXD4P09016 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HOXD4P09016 AC004448.1-201ENST00000458332 883 ntBASIC20.72■□□□□ 0.91
HOXD4P09016 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HOXD4P09016 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HOXD4P09016 AC110285.6-201ENST00000617652 491 ntBASIC20.72■□□□□ 0.91
HOXD4P09016 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
HOXD4P09016 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HOXD4P09016 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.72■□□□□ 0.91
HOXD4P09016 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
HOXD4P09016 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
HOXD4P09016 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HOXD4P09016 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HOXD4P09016 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.71■□□□□ 0.91
HOXD4P09016 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.71■□□□□ 0.91
HOXD4P09016 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC20.71■□□□□ 0.91
HOXD4P09016 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HOXD4P09016 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
HOXD4P09016 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HOXD4P09016 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HOXD4P09016 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HOXD4P09016 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.71■□□□□ 0.91
HOXD4P09016 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HOXD4P09016 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.71■□□□□ 0.91
HOXD4P09016 AL512631.2-201ENST00000604634 923 ntBASIC20.71■□□□□ 0.91
HOXD4P09016 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms