Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 AC105250.1-201ENST00000509378 2057 ntBASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 AC092127.1-201ENST00000567093 3455 ntBASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 AC067930.6-201ENST00000623257 4947 ntBASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAIPQ9BWF2 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 AC090616.6-203ENST00000579186 1945 ntBASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 KRT8P13-201ENST00000463294 1010 ntBASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 RPSAP36-202ENST00000494591 1261 ntBASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 CYGB-203ENST00000589145 788 ntTSL 3 BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 PRKN-211ENST00000615065 261 ntTSL 5 BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAIPQ9BWF2 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 STK33-217ENST00000534493 1895 ntTSL 2 BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 AL354989.2-201ENST00000435838 1540 ntBASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 RPS3-201ENST00000278572 907 ntTSL 3 BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 SNX21-203ENST00000372541 771 ntTSL 2 BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 NME2-201ENST00000393183 568 ntTSL 2 BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 HLA-K-203ENST00000430151 1046 ntBASIC16.56■□□□□ 0.24
TRAIPQ9BWF2 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms