Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
PAAF1Q9BRP4 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PAAF1Q9BRP4 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PAAF1Q9BRP4 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC15.99■□□□□ 0.15
PAAF1Q9BRP4 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 NPPA-201ENST00000376476 728 ntTSL 3 BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 CRCP-204ENST00000398684 492 ntTSL 2 BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 HNRNPA1P36-201ENST00000521313 955 ntBASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 CHMP4BP1-201ENST00000556017 588 ntBASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 CICP23-201ENST00000605013 2741 ntBASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 AC244394.1-201ENST00000435000 1665 ntBASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 AC006058.4-201ENST00000624016 1670 ntBASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PAAF1Q9BRP4 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 RPL18P13-201ENST00000478088 569 ntBASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 AC013355.1-201ENST00000562625 723 ntBASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 ARL16-210ENST00000574938 751 ntTSL 2 BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 AC132192.2-201ENST00000596206 1147 ntBASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 AC068587.8-201ENST00000641239 219 ntBASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 API5-203ENST00000455725 2257 ntTSL 2 BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PAAF1Q9BRP4 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.96■□□□□ 0.15
PAAF1Q9BRP4 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.96■□□□□ 0.15
PAAF1Q9BRP4 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PAAF1Q9BRP4 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PAAF1Q9BRP4 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PAAF1Q9BRP4 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
PAAF1Q9BRP4 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PAAF1Q9BRP4 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms