Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP54Q70EL1 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP54Q70EL1 HLA-DMA-203ENST00000395305 777 ntBASIC19.47■□□□□ 0.71
USP54Q70EL1 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC19.47■□□□□ 0.71
USP54Q70EL1 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC19.47■□□□□ 0.71
USP54Q70EL1 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
USP54Q70EL1 PTK2-225ENST00000520892 571 ntTSL 4 BASIC19.47■□□□□ 0.71
USP54Q70EL1 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC19.47■□□□□ 0.71
USP54Q70EL1 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC19.47■□□□□ 0.71
USP54Q70EL1 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC19.47■□□□□ 0.71
USP54Q70EL1 SIGLEC22P-201ENST00000599104 714 ntBASIC19.47■□□□□ 0.71
USP54Q70EL1 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC19.47■□□□□ 0.71
USP54Q70EL1 AL161773.1-201ENST00000624845 863 ntBASIC19.47■□□□□ 0.71
USP54Q70EL1 HLA-C-210ENST00000640219 976 ntBASIC19.47■□□□□ 0.71
USP54Q70EL1 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
USP54Q70EL1 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP54Q70EL1 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
USP54Q70EL1 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP54Q70EL1 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP54Q70EL1 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP54Q70EL1 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC19.47■□□□□ 0.71
USP54Q70EL1 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP54Q70EL1 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP54Q70EL1 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP54Q70EL1 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP54Q70EL1 AC013268.4-201ENST00000637413 2228 ntBASIC19.47■□□□□ 0.71
USP54Q70EL1 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC19.47■□□□□ 0.71
USP54Q70EL1 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP54Q70EL1 AL354702.1-201ENST00000442006 1960 ntBASIC19.46■□□□□ 0.71
USP54Q70EL1 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC19.46■□□□□ 0.71
USP54Q70EL1 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP54Q70EL1 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP54Q70EL1 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP54Q70EL1 CELP-201ENST00000411440 1249 ntTSL 5 BASIC19.46■□□□□ 0.71
USP54Q70EL1 PIN4P1-201ENST00000451079 396 ntBASIC19.46■□□□□ 0.71
USP54Q70EL1 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC19.46■□□□□ 0.71
USP54Q70EL1 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC19.46■□□□□ 0.71
USP54Q70EL1 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
USP54Q70EL1 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC19.46■□□□□ 0.71
USP54Q70EL1 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP54Q70EL1 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP54Q70EL1 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC19.46■□□□□ 0.71
USP54Q70EL1 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
USP54Q70EL1 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC19.46■□□□□ 0.71
USP54Q70EL1 NAMA-206ENST00000605377 509 ntTSL 5 BASIC19.46■□□□□ 0.71
USP54Q70EL1 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP54Q70EL1 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP54Q70EL1 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP54Q70EL1 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP54Q70EL1 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
USP54Q70EL1 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP54Q70EL1 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC19.46■□□□□ 0.71
USP54Q70EL1 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP54Q70EL1 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC19.46■□□□□ 0.71
USP54Q70EL1 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
USP54Q70EL1 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP54Q70EL1 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP54Q70EL1 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC19.46■□□□□ 0.71
USP54Q70EL1 PYY2-201ENST00000315776 282 ntBASIC19.46■□□□□ 0.71
USP54Q70EL1 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
USP54Q70EL1 AC097065.1-201ENST00000425737 517 ntBASIC19.46■□□□□ 0.71
USP54Q70EL1 RN7SL530P-201ENST00000485097 298 ntBASIC19.46■□□□□ 0.71
USP54Q70EL1 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC19.46■□□□□ 0.71
USP54Q70EL1 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP54Q70EL1 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP54Q70EL1 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
USP54Q70EL1 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC19.46■□□□□ 0.71
USP54Q70EL1 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC19.46■□□□□ 0.71
USP54Q70EL1 AL133467.4-201ENST00000602953 725 ntBASIC19.46■□□□□ 0.71
USP54Q70EL1 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC19.46■□□□□ 0.71
USP54Q70EL1 AC138466.5-201ENST00000624002 808 ntBASIC19.46■□□□□ 0.71
USP54Q70EL1 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.7
USP54Q70EL1 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC19.45■□□□□ 0.7
USP54Q70EL1 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC19.45■□□□□ 0.7
USP54Q70EL1 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP54Q70EL1 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP54Q70EL1 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
USP54Q70EL1 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC19.45■□□□□ 0.7
USP54Q70EL1 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
USP54Q70EL1 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
USP54Q70EL1 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP54Q70EL1 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP54Q70EL1 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
USP54Q70EL1 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP54Q70EL1 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP54Q70EL1 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP54Q70EL1 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP54Q70EL1 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC19.45■□□□□ 0.7
USP54Q70EL1 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC19.45■□□□□ 0.7
USP54Q70EL1 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP54Q70EL1 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP54Q70EL1 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC19.45■□□□□ 0.7
USP54Q70EL1 AC098934.1-203ENST00000442868 1262 ntBASIC19.45■□□□□ 0.7
USP54Q70EL1 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC19.45■□□□□ 0.7
USP54Q70EL1 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC19.45■□□□□ 0.7
USP54Q70EL1 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC19.45■□□□□ 0.7
USP54Q70EL1 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP54Q70EL1 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP54Q70EL1 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP54Q70EL1 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms