Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.66■□□□□ 0.58
RC3H1Q5TC82 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
RC3H1Q5TC82 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
RC3H1Q5TC82 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RC3H1Q5TC82 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RC3H1Q5TC82 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC18.65■□□□□ 0.58
RC3H1Q5TC82 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 AL357563.1-201ENST00000404728 395 ntBASIC18.65■□□□□ 0.58
RC3H1Q5TC82 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 RN7SL530P-201ENST00000485097 298 ntBASIC18.65■□□□□ 0.58
RC3H1Q5TC82 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 AC009093.10-201ENST00000641956 1442 ntBASIC18.65■□□□□ 0.58
RC3H1Q5TC82 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 AC087481.3-201ENST00000602886 1894 ntBASIC18.65■□□□□ 0.58
RC3H1Q5TC82 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RC3H1Q5TC82 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
RC3H1Q5TC82 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.58
RC3H1Q5TC82 HLA-DQB1-202ENST00000399079 1501 ntBASIC18.64■□□□□ 0.58
RC3H1Q5TC82 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
RC3H1Q5TC82 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 RN7SL470P-201ENST00000583069 259 ntBASIC18.64■□□□□ 0.57
RC3H1Q5TC82 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RC3H1Q5TC82 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 R3HDM2P2-201ENST00000401880 2116 ntBASIC18.63■□□□□ 0.57
RC3H1Q5TC82 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 AC005041.3-201ENST00000606287 649 ntBASIC18.63■□□□□ 0.57
RC3H1Q5TC82 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC18.63■□□□□ 0.57
RC3H1Q5TC82 MRPL37P1-201ENST00000592451 1337 ntBASIC18.63■□□□□ 0.57
RC3H1Q5TC82 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 KRT8P28-201ENST00000433288 1390 ntBASIC18.63■□□□□ 0.57
RC3H1Q5TC82 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RC3H1Q5TC82 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms