Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HDAC4P56524 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HDAC4P56524 AC098614.1-201ENST00000368528 745 ntBASIC15.83■□□□□ 0.12
HDAC4P56524 B9D1-203ENST00000395615 805 ntTSL 3 BASIC15.83■□□□□ 0.12
HDAC4P56524 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HDAC4P56524 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC15.83■□□□□ 0.12
HDAC4P56524 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC15.83■□□□□ 0.12
HDAC4P56524 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC15.83■□□□□ 0.12
HDAC4P56524 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC15.83■□□□□ 0.12
HDAC4P56524 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HDAC4P56524 DUX4L47-201ENST00000566374 394 ntBASIC15.83■□□□□ 0.12
HDAC4P56524 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC15.83■□□□□ 0.12
HDAC4P56524 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HDAC4P56524 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15.83■□□□□ 0.12
HDAC4P56524 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HDAC4P56524 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HDAC4P56524 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
HDAC4P56524 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HDAC4P56524 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC15.83■□□□□ 0.12
HDAC4P56524 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HDAC4P56524 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.83■□□□□ 0.12
HDAC4P56524 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.83■□□□□ 0.12
HDAC4P56524 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
HDAC4P56524 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC15.82■□□□□ 0.12
HDAC4P56524 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 CICP14-201ENST00000629111 2732 ntBASIC15.82■□□□□ 0.12
HDAC4P56524 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
HDAC4P56524 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC15.82■□□□□ 0.12
HDAC4P56524 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC15.82■□□□□ 0.12
HDAC4P56524 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
HDAC4P56524 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
HDAC4P56524 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.82■□□□□ 0.12
HDAC4P56524 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC15.82■□□□□ 0.12
HDAC4P56524 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
HDAC4P56524 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC15.82■□□□□ 0.12
HDAC4P56524 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.82■□□□□ 0.12
HDAC4P56524 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 EIF3FP3-201ENST00000434851 1086 ntBASIC15.82■□□□□ 0.12
HDAC4P56524 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.82■□□□□ 0.12
HDAC4P56524 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 RN7SL692P-201ENST00000464677 288 ntBASIC15.82■□□□□ 0.12
HDAC4P56524 AC022137.2-201ENST00000503482 481 ntBASIC15.82■□□□□ 0.12
HDAC4P56524 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC15.82■□□□□ 0.12
HDAC4P56524 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC15.82■□□□□ 0.12
HDAC4P56524 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.82■□□□□ 0.12
HDAC4P56524 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC15.82■□□□□ 0.12
HDAC4P56524 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC15.82■□□□□ 0.12
HDAC4P56524 AC027307.3-201ENST00000594262 1100 ntBASIC15.82■□□□□ 0.12
HDAC4P56524 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC15.82■□□□□ 0.12
HDAC4P56524 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.82■□□□□ 0.12
HDAC4P56524 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.82■□□□□ 0.12
HDAC4P56524 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.82■□□□□ 0.12
HDAC4P56524 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC15.82■□□□□ 0.12
HDAC4P56524 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
HDAC4P56524 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.82■□□□□ 0.12
HDAC4P56524 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 AC023090.2-201ENST00000625182 2110 ntBASIC15.82■□□□□ 0.12
HDAC4P56524 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
HDAC4P56524 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.82■□□□□ 0.12
HDAC4P56524 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HDAC4P56524 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC15.82■□□□□ 0.12
HDAC4P56524 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC15.82■□□□□ 0.12
HDAC4P56524 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.81■□□□□ 0.12
HDAC4P56524 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
HDAC4P56524 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
HDAC4P56524 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
HDAC4P56524 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
HDAC4P56524 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
HDAC4P56524 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDAC4P56524 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDAC4P56524 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
HDAC4P56524 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDAC4P56524 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
HDAC4P56524 RPS15-201ENST00000233609 534 ntTSL 2 BASIC15.81■□□□□ 0.12
HDAC4P56524 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms