Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC15.42■□□□□ 0.06
CDH4P55283 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC15.42■□□□□ 0.06
CDH4P55283 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH4P55283 AC138696.2-201ENST00000607376 223 ntBASIC15.42■□□□□ 0.06
CDH4P55283 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CDH4P55283 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.42■□□□□ 0.06
CDH4P55283 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CDH4P55283 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH4P55283 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.42■□□□□ 0.06
CDH4P55283 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH4P55283 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.42■□□□□ 0.06
CDH4P55283 LINC00528-201ENST00000600723 2160 ntBASIC15.42■□□□□ 0.06
CDH4P55283 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CDH4P55283 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
CDH4P55283 AL138725.1-201ENST00000407347 1314 ntBASIC15.42■□□□□ 0.06
CDH4P55283 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH4P55283 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CDH4P55283 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC15.41■□□□□ 0.06
CDH4P55283 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.41■□□□□ 0.06
CDH4P55283 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
CDH4P55283 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC15.41■□□□□ 0.06
CDH4P55283 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC15.41■□□□□ 0.06
CDH4P55283 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC15.41■□□□□ 0.06
CDH4P55283 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC15.41■□□□□ 0.06
CDH4P55283 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
CDH4P55283 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
CDH4P55283 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 CNN2P10-201ENST00000443067 918 ntBASIC15.41■□□□□ 0.06
CDH4P55283 HOMER2P2-201ENST00000451621 847 ntBASIC15.41■□□□□ 0.06
CDH4P55283 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC15.41■□□□□ 0.06
CDH4P55283 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC15.41■□□□□ 0.06
CDH4P55283 AP003171.2-201ENST00000528208 925 ntBASIC15.41■□□□□ 0.06
CDH4P55283 AL583810.1-201ENST00000553344 1045 ntBASIC15.41■□□□□ 0.06
CDH4P55283 AC010328.2-201ENST00000597698 1111 ntBASIC15.41■□□□□ 0.06
CDH4P55283 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC15.41■□□□□ 0.06
CDH4P55283 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC15.41■□□□□ 0.06
CDH4P55283 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.41■□□□□ 0.06
CDH4P55283 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC15.41■□□□□ 0.06
CDH4P55283 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CDH4P55283 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 AC006058.4-201ENST00000624016 1670 ntBASIC15.41■□□□□ 0.06
CDH4P55283 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CDH4P55283 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CDH4P55283 LINC00554-201ENST00000564841 3011 ntBASIC15.41■□□□□ 0.06
CDH4P55283 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.41■□□□□ 0.06
CDH4P55283 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH4P55283 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH4P55283 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH4P55283 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH4P55283 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH4P55283 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH4P55283 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH4P55283 AC003102.2-201ENST00000589195 1469 ntBASIC15.4■□□□□ 0.06
CDH4P55283 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CDH4P55283 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC15.4■□□□□ 0.06
CDH4P55283 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH4P55283 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH4P55283 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.4■□□□□ 0.06
CDH4P55283 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC15.4■□□□□ 0.06
CDH4P55283 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH4P55283 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH4P55283 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC15.4■□□□□ 0.06
CDH4P55283 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH4P55283 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH4P55283 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH4P55283 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH4P55283 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH4P55283 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CDH4P55283 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDH4P55283 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CDH4P55283 RN7SKP230-201ENST00000365642 335 ntBASIC15.4■□□□□ 0.06
CDH4P55283 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms