Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP98P52948 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP98P52948 AC011270.2-201ENST00000624293 2550 ntBASIC18.37■□□□□ 0.53
NUP98P52948 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC18.36■□□□□ 0.53
NUP98P52948 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NUP98P52948 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
NUP98P52948 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC18.36■□□□□ 0.53
NUP98P52948 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NUP98P52948 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NUP98P52948 ZEB1-AS1-208ENST00000607166 2503 ntBASIC18.36■□□□□ 0.53
NUP98P52948 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NUP98P52948 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NUP98P52948 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NUP98P52948 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC18.36■□□□□ 0.53
NUP98P52948 AL807761.2-201ENST00000422849 729 ntBASIC18.36■□□□□ 0.53
NUP98P52948 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC18.36■□□□□ 0.53
NUP98P52948 TPM1-223ENST00000560445 485 ntTSL 3 BASIC18.36■□□□□ 0.53
NUP98P52948 AC084781.1-201ENST00000613737 656 ntBASIC18.36■□□□□ 0.53
NUP98P52948 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
NUP98P52948 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
NUP98P52948 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC18.36■□□□□ 0.53
NUP98P52948 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NUP98P52948 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.36■□□□□ 0.53
NUP98P52948 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NUP98P52948 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NUP98P52948 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NUP98P52948 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC18.35■□□□□ 0.53
NUP98P52948 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC18.35■□□□□ 0.53
NUP98P52948 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUP98P52948 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUP98P52948 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUP98P52948 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC18.35■□□□□ 0.53
NUP98P52948 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NUP98P52948 RHEB-207ENST00000496004 744 ntTSL 2 BASIC18.35■□□□□ 0.53
NUP98P52948 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC18.35■□□□□ 0.53
NUP98P52948 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC18.35■□□□□ 0.53
NUP98P52948 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC18.35■□□□□ 0.53
NUP98P52948 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC18.35■□□□□ 0.53
NUP98P52948 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
NUP98P52948 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC18.35■□□□□ 0.53
NUP98P52948 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUP98P52948 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NUP98P52948 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUP98P52948 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUP98P52948 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUP98P52948 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUP98P52948 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUP98P52948 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
NUP98P52948 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NUP98P52948 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUP98P52948 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NUP98P52948 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NUP98P52948 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUP98P52948 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC18.35■□□□□ 0.53
NUP98P52948 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
NUP98P52948 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUP98P52948 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
NUP98P52948 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
NUP98P52948 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC18.35■□□□□ 0.53
NUP98P52948 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUP98P52948 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NUP98P52948 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
NUP98P52948 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC18.35■□□□□ 0.53
NUP98P52948 RPL8P2-201ENST00000430538 502 ntBASIC18.35■□□□□ 0.53
NUP98P52948 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC18.35■□□□□ 0.53
NUP98P52948 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC18.35■□□□□ 0.53
NUP98P52948 RPL18AP3-201ENST00000462885 528 ntBASIC18.35■□□□□ 0.53
NUP98P52948 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC18.35■□□□□ 0.53
NUP98P52948 AP002803.1-201ENST00000528836 498 ntBASIC18.35■□□□□ 0.53
NUP98P52948 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC18.35■□□□□ 0.53
NUP98P52948 AC124068.2-201ENST00000569473 1109 ntBASIC18.35■□□□□ 0.53
NUP98P52948 MIR4750-201ENST00000584564 56 ntBASIC18.35■□□□□ 0.53
NUP98P52948 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
NUP98P52948 WT1-AS_6.1-201ENST00000614919 121 ntBASIC18.35■□□□□ 0.53
NUP98P52948 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
NUP98P52948 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC18.35■□□□□ 0.53
NUP98P52948 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC18.34■□□□□ 0.53
NUP98P52948 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NUP98P52948 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NUP98P52948 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC18.34■□□□□ 0.53
NUP98P52948 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NUP98P52948 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
NUP98P52948 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NUP98P52948 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
NUP98P52948 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NUP98P52948 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC18.34■□□□□ 0.53
NUP98P52948 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC18.34■□□□□ 0.53
NUP98P52948 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC18.34■□□□□ 0.53
NUP98P52948 AC114947.1-202ENST00000514136 344 ntBASIC18.34■□□□□ 0.53
NUP98P52948 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC18.34■□□□□ 0.53
NUP98P52948 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NUP98P52948 MIR6769A-201ENST00000617340 73 ntBASIC18.34■□□□□ 0.53
NUP98P52948 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
NUP98P52948 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC18.34■□□□□ 0.53
NUP98P52948 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
NUP98P52948 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NUP98P52948 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
NUP98P52948 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NUP98P52948 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
NUP98P52948 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms