Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC15.29■□□□□ 0.04
PTPN4P29074 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC15.29■□□□□ 0.04
PTPN4P29074 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC15.29■□□□□ 0.04
PTPN4P29074 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
PTPN4P29074 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.29■□□□□ 0.04
PTPN4P29074 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
PTPN4P29074 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN4P29074 AL132655.2-201ENST00000596276 594 ntBASIC15.29■□□□□ 0.04
PTPN4P29074 RNA5-8SN1-201ENST00000610460 153 ntBASIC15.29■□□□□ 0.04
PTPN4P29074 RNA5-8SN5-202ENST00000612463 153 ntBASIC15.29■□□□□ 0.04
PTPN4P29074 RNA5-8SN4-201ENST00000613359 153 ntBASIC15.29■□□□□ 0.04
PTPN4P29074 RNA5-8SN5-201ENST00000619471 153 ntBASIC15.29■□□□□ 0.04
PTPN4P29074 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC15.29■□□□□ 0.04
PTPN4P29074 AC004840.1-201ENST00000636359 365 ntBASIC15.29■□□□□ 0.04
PTPN4P29074 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC15.29■□□□□ 0.04
PTPN4P29074 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN4P29074 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
PTPN4P29074 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN4P29074 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN4P29074 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN4P29074 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC15.29■□□□□ 0.04
PTPN4P29074 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC15.29■□□□□ 0.04
PTPN4P29074 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC15.29■□□□□ 0.04
PTPN4P29074 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN4P29074 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.29■□□□□ 0.04
PTPN4P29074 PCDHGB8P-201ENST00000502926 1973 ntBASIC15.29■□□□□ 0.04
PTPN4P29074 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN4P29074 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN4P29074 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PTPN4P29074 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC15.29■□□□□ 0.04
PTPN4P29074 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN4P29074 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN4P29074 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTPN4P29074 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
PTPN4P29074 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC15.28■□□□□ 0.04
PTPN4P29074 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
PTPN4P29074 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.28■□□□□ 0.04
PTPN4P29074 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC15.28■□□□□ 0.04
PTPN4P29074 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC15.28■□□□□ 0.04
PTPN4P29074 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC15.28■□□□□ 0.04
PTPN4P29074 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC15.28■□□□□ 0.04
PTPN4P29074 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
PTPN4P29074 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
PTPN4P29074 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC15.28■□□□□ 0.04
PTPN4P29074 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 COX5BP8-201ENST00000416911 349 ntBASIC15.28■□□□□ 0.04
PTPN4P29074 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC15.28■□□□□ 0.04
PTPN4P29074 SERBP1P3-201ENST00000459980 809 ntBASIC15.28■□□□□ 0.04
PTPN4P29074 TP53TG3HP-202ENST00000569755 579 ntBASIC15.28■□□□□ 0.04
PTPN4P29074 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15.28■□□□□ 0.04
PTPN4P29074 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC15.28■□□□□ 0.04
PTPN4P29074 AC061975.2-201ENST00000581722 295 ntBASIC15.28■□□□□ 0.04
PTPN4P29074 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.28■□□□□ 0.04
PTPN4P29074 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC15.28■□□□□ 0.04
PTPN4P29074 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC15.28■□□□□ 0.04
PTPN4P29074 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
PTPN4P29074 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC15.28■□□□□ 0.04
PTPN4P29074 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
PTPN4P29074 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN4P29074 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN4P29074 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN4P29074 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN4P29074 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN4P29074 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC15.27■□□□□ 0.04
PTPN4P29074 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN4P29074 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
PTPN4P29074 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN4P29074 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC15.27■□□□□ 0.04
PTPN4P29074 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
PTPN4P29074 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN4P29074 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
PTPN4P29074 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN4P29074 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
PTPN4P29074 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN4P29074 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PTPN4P29074 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms