Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A1P02462 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A1P02462 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A1P02462 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A1P02462 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
COL4A1P02462 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A1P02462 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A1P02462 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC18.03■□□□□ 0.48
COL4A1P02462 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A1P02462 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A1P02462 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A1P02462 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A1P02462 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
COL4A1P02462 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
COL4A1P02462 AL627231.1-201ENST00000394467 1125 ntBASIC18.03■□□□□ 0.48
COL4A1P02462 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A1P02462 CCNC-217ENST00000523985 958 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A1P02462 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A1P02462 PGAM1P5-201ENST00000548011 764 ntBASIC18.03■□□□□ 0.48
COL4A1P02462 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC18.03■□□□□ 0.48
COL4A1P02462 NAT9-220ENST00000582870 896 ntTSL 5 BASIC18.03■□□□□ 0.48
COL4A1P02462 COX6A1P2-201ENST00000620597 330 ntBASIC18.03■□□□□ 0.48
COL4A1P02462 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC18.03■□□□□ 0.48
COL4A1P02462 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
COL4A1P02462 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A1P02462 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A1P02462 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A1P02462 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A1P02462 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A1P02462 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A1P02462 PARN-202ENST00000420015 2360 ntTSL 2 BASIC18.02■□□□□ 0.48
COL4A1P02462 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A1P02462 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC18.02■□□□□ 0.48
COL4A1P02462 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC18.02■□□□□ 0.48
COL4A1P02462 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A1P02462 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A1P02462 AC006486.2-201ENST00000624246 2199 ntBASIC18.02■□□□□ 0.47
COL4A1P02462 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
COL4A1P02462 AC092580.1-201ENST00000433998 658 ntBASIC18.02■□□□□ 0.47
COL4A1P02462 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC18.02■□□□□ 0.47
COL4A1P02462 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
COL4A1P02462 FTH1P22-201ENST00000456305 520 ntBASIC18.02■□□□□ 0.47
COL4A1P02462 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC18.02■□□□□ 0.47
COL4A1P02462 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC18.02■□□□□ 0.47
COL4A1P02462 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC18.02■□□□□ 0.47
COL4A1P02462 MIR4750-201ENST00000584564 56 ntBASIC18.02■□□□□ 0.47
COL4A1P02462 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC18.02■□□□□ 0.47
COL4A1P02462 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL4A1P02462 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
COL4A1P02462 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL4A1P02462 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
COL4A1P02462 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL4A1P02462 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL4A1P02462 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL4A1P02462 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC18.02■□□□□ 0.47
COL4A1P02462 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC18.01■□□□□ 0.47
COL4A1P02462 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A1P02462 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC18.01■□□□□ 0.47
COL4A1P02462 HYMAI-201ENST00000635591 3347 ntBASIC18.01■□□□□ 0.47
COL4A1P02462 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.01■□□□□ 0.47
COL4A1P02462 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A1P02462 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A1P02462 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A1P02462 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A1P02462 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A1P02462 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A1P02462 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
COL4A1P02462 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A1P02462 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
COL4A1P02462 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC18.01■□□□□ 0.47
COL4A1P02462 KRT18P66-201ENST00000452970 1269 ntBASIC18.01■□□□□ 0.47
COL4A1P02462 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A1P02462 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC18.01■□□□□ 0.47
COL4A1P02462 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A1P02462 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC18.01■□□□□ 0.47
COL4A1P02462 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.01■□□□□ 0.47
COL4A1P02462 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A1P02462 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A1P02462 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC18.01■□□□□ 0.47
COL4A1P02462 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
COL4A1P02462 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC18.01■□□□□ 0.47
COL4A1P02462 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A1P02462 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A1P02462 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A1P02462 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC18.01■□□□□ 0.47
COL4A1P02462 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18■□□□□ 0.47
COL4A1P02462 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
COL4A1P02462 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL4A1P02462 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC18■□□□□ 0.47
COL4A1P02462 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL4A1P02462 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC18■□□□□ 0.47
COL4A1P02462 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL4A1P02462 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL4A1P02462 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC18■□□□□ 0.47
COL4A1P02462 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
COL4A1P02462 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC18■□□□□ 0.47
COL4A1P02462 AC026320.2-201ENST00000434379 478 ntBASIC18■□□□□ 0.47
COL4A1P02462 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC18■□□□□ 0.47
COL4A1P02462 RN7SL277P-201ENST00000481521 288 ntBASIC18■□□□□ 0.47
COL4A1P02462 AC026410.1-201ENST00000507366 1101 ntBASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms