Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
SIX3O95343 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SIX3O95343 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SIX3O95343 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SIX3O95343 SPDYE19P-201ENST00000338590 713 ntBASIC14.82□□□□□ -0.04
SIX3O95343 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.82□□□□□ -0.04
SIX3O95343 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
SIX3O95343 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
SIX3O95343 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SIX3O95343 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SIX3O95343 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.82□□□□□ -0.04
SIX3O95343 GNAQP1-201ENST00000444815 1067 ntBASIC14.82□□□□□ -0.04
SIX3O95343 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.82□□□□□ -0.04
SIX3O95343 AL512638.1-201ENST00000457493 794 ntBASIC14.82□□□□□ -0.04
SIX3O95343 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SIX3O95343 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.82□□□□□ -0.04
SIX3O95343 AL355385.1-201ENST00000606123 409 ntBASIC14.82□□□□□ -0.04
SIX3O95343 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
SIX3O95343 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SIX3O95343 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC14.82□□□□□ -0.04
SIX3O95343 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
SIX3O95343 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.82□□□□□ -0.04
SIX3O95343 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SIX3O95343 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.82□□□□□ -0.04
SIX3O95343 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
SIX3O95343 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
SIX3O95343 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC14.82□□□□□ -0.04
SIX3O95343 MPI-203ENST00000535694 1523 ntTSL 2 BASIC14.82□□□□□ -0.04
SIX3O95343 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SIX3O95343 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SIX3O95343 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
SIX3O95343 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SIX3O95343 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SIX3O95343 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.81□□□□□ -0.04
SIX3O95343 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
SIX3O95343 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SIX3O95343 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SIX3O95343 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
SIX3O95343 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SIX3O95343 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
SIX3O95343 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.81□□□□□ -0.04
SIX3O95343 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SIX3O95343 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
SIX3O95343 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.81□□□□□ -0.04
SIX3O95343 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.81□□□□□ -0.04
SIX3O95343 AC093214.1-201ENST00000511688 1107 ntBASIC14.81□□□□□ -0.04
SIX3O95343 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.81□□□□□ -0.04
SIX3O95343 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.81□□□□□ -0.04
SIX3O95343 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.81□□□□□ -0.04
SIX3O95343 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.81□□□□□ -0.04
SIX3O95343 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC14.81□□□□□ -0.04
SIX3O95343 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
SIX3O95343 AC005498.2-205ENST00000593218 784 ntBASIC14.81□□□□□ -0.04
SIX3O95343 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC14.81□□□□□ -0.04
SIX3O95343 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.81□□□□□ -0.04
SIX3O95343 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SIX3O95343 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.81□□□□□ -0.04
SIX3O95343 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SIX3O95343 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
SIX3O95343 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SIX3O95343 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SIX3O95343 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SIX3O95343 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SIX3O95343 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.81□□□□□ -0.04
SIX3O95343 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
SIX3O95343 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
SIX3O95343 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
SIX3O95343 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.81□□□□□ -0.04
SIX3O95343 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
SIX3O95343 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
SIX3O95343 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
SIX3O95343 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
SIX3O95343 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC14.8□□□□□ -0.04
SIX3O95343 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC14.8□□□□□ -0.04
SIX3O95343 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
SIX3O95343 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
SIX3O95343 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.8□□□□□ -0.04
SIX3O95343 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
SIX3O95343 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
SIX3O95343 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.8□□□□□ -0.04
SIX3O95343 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
SIX3O95343 PNMT-202ENST00000394246 821 ntTSL 2 BASIC14.8□□□□□ -0.04
SIX3O95343 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
SIX3O95343 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SIX3O95343 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.8□□□□□ -0.04
SIX3O95343 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms