Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
SMKR1H3BMG3 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 AC012508.2-201ENST00000567613 1472 ntBASIC11.12□□□□□ -0.63
SMKR1H3BMG3 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 RPS2P28-201ENST00000314255 741 ntBASIC11.12□□□□□ -0.63
SMKR1H3BMG3 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 UNC93B6-202ENST00000528242 690 ntBASIC11.12□□□□□ -0.63
SMKR1H3BMG3 TOLLIP-AS1-201ENST00000530897 939 ntBASIC11.12□□□□□ -0.63
SMKR1H3BMG3 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 AQP6-205ENST00000618286 829 ntTSL 5 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 AC148477.8-201ENST00000624298 468 ntBASIC11.12□□□□□ -0.63
SMKR1H3BMG3 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 MIR497HG-202ENST00000572453 3838 ntBASIC11.12□□□□□ -0.63
SMKR1H3BMG3 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC11.12□□□□□ -0.63
SMKR1H3BMG3 AC007787.1-201ENST00000588095 1583 ntBASIC11.11□□□□□ -0.63
SMKR1H3BMG3 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC11.11□□□□□ -0.63
SMKR1H3BMG3 SYS1-203ENST00000414310 795 ntTSL 3 BASIC11.11□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms