Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 PCBP2-OT1-201ENST00000634357 590 ntBASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 AC002472.3-201ENST00000640124 621 ntBASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 MTHFR-217ENST00000641820 1569 ntBASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PCDHGA1Q9Y5H4 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 SHC1P1-201ENST00000425230 1745 ntBASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 RBM38-204ENST00000371219 760 ntTSL 2 BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 RN7SKP175-201ENST00000408472 289 ntBASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 PDIA3P2-201ENST00000428073 158 ntBASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 CEP164P1-201ENST00000455142 418 ntBASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 AC103988.2-201ENST00000561804 725 ntBASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 DUX4L46-201ENST00000566845 751 ntBASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 RN7SL555P-201ENST00000584742 339 ntBASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 AC012044.1-201ENST00000603431 297 ntBASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 AL596087.1-201ENST00000400979 1969 ntBASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 AC068587.6-202ENST00000641839 5619 ntBASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
PCDHGA1Q9Y5H4 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 BANP-204ENST00000393208 2283 ntTSL 2 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 AC132872.4-202ENST00000622924 2756 ntBASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 AC010141.1-201ENST00000411585 623 ntBASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 ISCA2P1-201ENST00000425548 448 ntBASIC14.49□□□□□ -0.09
PCDHGA1Q9Y5H4 HLA-K-203ENST00000430151 1046 ntBASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms