Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
CLHC1Q8NHS4 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
CLHC1Q8NHS4 AC018442.1-201ENST00000421439 2061 ntBASIC14.62□□□□□ -0.07
CLHC1Q8NHS4 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.62□□□□□ -0.07
CLHC1Q8NHS4 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
CLHC1Q8NHS4 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLHC1Q8NHS4 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
CLHC1Q8NHS4 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLHC1Q8NHS4 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLHC1Q8NHS4 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
CLHC1Q8NHS4 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
CLHC1Q8NHS4 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLHC1Q8NHS4 AC067750.1-201ENST00000608826 6545 ntBASIC14.62□□□□□ -0.07
CLHC1Q8NHS4 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLHC1Q8NHS4 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 METTL21AP1-201ENST00000438852 635 ntBASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLHC1Q8NHS4 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 TSSK5P-201ENST00000423978 907 ntBASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 AC241585.1-201ENST00000433527 519 ntBASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 AC114501.2-201ENST00000439631 535 ntBASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 CLK3P2-201ENST00000427566 1453 ntBASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.6□□□□□ -0.07
CLHC1Q8NHS4 AP001267.2-201ENST00000532619 2086 ntBASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms