Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 LINC00343-203ENST00000454555 1765 ntTSL 2 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 ALDH1L1-205ENST00000452905 2758 ntTSL 2 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 PES1-204ENST00000402284 2144 ntTSL 5 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 MYO1D-206ENST00000579584 3500 ntTSL 2 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 FBXW11-201ENST00000265094 4342 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 AREL1-201ENST00000356357 5456 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 TACC2-209ENST00000369004 3667 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 AC048382.5-201ENST00000618330 3667 ntTSL 5 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 SLC13A4-201ENST00000354042 2897 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 RFX5-202ENST00000368870 2459 ntAPPRIS P1 TSL 5 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 LINC01623-201ENST00000440244 2458 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 ADK-205ENST00000539909 1866 ntTSL 2 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 PRKAB1-205ENST00000540121 1673 ntTSL 5 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 AL138709.1-201ENST00000614840 1693 ntBASIC9.37□□□□□ -0.91
LINC00643Q86TS7 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 CHCHD1-202ENST00000372837 1202 ntTSL 2 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 AL160237.2-201ENST00000556165 472 ntBASIC9.37□□□□□ -0.91
LINC00643Q86TS7 SLC25A1P4-201ENST00000567977 778 ntBASIC9.37□□□□□ -0.91
LINC00643Q86TS7 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 AC092666.2-201ENST00000613287 246 ntBASIC9.37□□□□□ -0.91
LINC00643Q86TS7 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 STAT6-202ENST00000454075 3037 ntAPPRIS P1 TSL 2 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 SLC25A25-204ENST00000373069 3376 ntTSL 5 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 UNC13B-206ENST00000617908 6432 ntTSL 5 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 TBC1D13-202ENST00000372648 3906 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 SCNN1B-202ENST00000343070 2597 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 SHROOM2P1-201ENST00000434773 2384 ntBASIC9.37□□□□□ -0.91
LINC00643Q86TS7 SPG11-203ENST00000535302 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 NPR2-201ENST00000342694 3686 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 KCNK10-202ENST00000319231 2725 ntAPPRIS P4 TSL 1 (best) BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 LHX6-204ENST00000394319 3465 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 MARCH10-201ENST00000311269 3090 ntAPPRIS P3 TSL 2 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 ATXN2-226ENST00000608853 4376 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 DNMT3B-206ENST00000456297 2315 ntTSL 2 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 PRKAB2-201ENST00000254101 5417 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 JDP2-203ENST00000435893 5401 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC9.37□□□□□ -0.91
LINC00643Q86TS7 DNMT3A-202ENST00000321117 4279 ntAPPRIS P2 TSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 LINC00477-201ENST00000483544 1710 ntTSL 2 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 HERC2P9-206ENST00000529624 5187 ntBASIC9.36□□□□□ -0.91
LINC00643Q86TS7 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 HOTTIP-203ENST00000521028 3345 ntTSL 5 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 TMBIM1-202ENST00000396809 2422 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 SMG8-202ENST00000543872 3477 ntAPPRIS P1 TSL 5 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 ATXN2L-203ENST00000340394 3807 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 TTYH3-203ENST00000403167 4263 ntTSL 5 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 RAB37-203ENST00000392612 2528 ntTSL 2 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 OTOF-203ENST00000339598 4756 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 PAX2-201ENST00000355243 4057 ntAPPRIS P2 TSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 LVRN-201ENST00000357872 4581 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 LINC00893-215ENST00000618757 2347 ntTSL 2 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 PYGM-201ENST00000164139 3198 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC9.36□□□□□ -0.91
LINC00643Q86TS7 NUS1P1-201ENST00000446295 882 ntBASIC9.36□□□□□ -0.91
LINC00643Q86TS7 ECEL1P2-202ENST00000465689 757 ntBASIC9.36□□□□□ -0.91
LINC00643Q86TS7 AC091874.3-201ENST00000512672 1195 ntBASIC9.36□□□□□ -0.91
LINC00643Q86TS7 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC9.36□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms