Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 STK33-217ENST00000534493 1895 ntTSL 2 BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC20.15■□□□□ 0.82
NPHP3Q7Z494 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
NPHP3Q7Z494 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
NPHP3Q7Z494 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
NPHP3Q7Z494 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
NPHP3Q7Z494 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
NPHP3Q7Z494 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
NPHP3Q7Z494 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
NPHP3Q7Z494 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
NPHP3Q7Z494 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC20.14■□□□□ 0.82
NPHP3Q7Z494 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 HCG27-204ENST00000424675 895 ntTSL 3 BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 RHEB-207ENST00000496004 744 ntTSL 2 BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 AC012158.2-201ENST00000536546 354 ntBASIC20.14■□□□□ 0.81
NPHP3Q7Z494 AL118516.1-201ENST00000564152 670 ntBASIC20.14■□□□□ 0.81
NPHP3Q7Z494 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 AL603832.2-201ENST00000566195 2125 ntBASIC20.14■□□□□ 0.81
NPHP3Q7Z494 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 AP003680.1-201ENST00000598970 3660 ntBASIC20.14■□□□□ 0.81
NPHP3Q7Z494 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 TMBIM7P-202ENST00000641474 1516 ntBASIC20.14■□□□□ 0.81
NPHP3Q7Z494 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 FAS-202ENST00000352159 1722 ntTSL 5 BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP3Q7Z494 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
NPHP3Q7Z494 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC20.13■□□□□ 0.81
NPHP3Q7Z494 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP3Q7Z494 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC20.13■□□□□ 0.81
NPHP3Q7Z494 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP3Q7Z494 OR2R1P-201ENST00000441404 914 ntBASIC20.13■□□□□ 0.81
NPHP3Q7Z494 DUX4L50-201ENST00000455245 715 ntBASIC20.13■□□□□ 0.81
NPHP3Q7Z494 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP3Q7Z494 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC20.13■□□□□ 0.81
NPHP3Q7Z494 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP3Q7Z494 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC20.13■□□□□ 0.81
NPHP3Q7Z494 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP3Q7Z494 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC20.13■□□□□ 0.81
NPHP3Q7Z494 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC20.13■□□□□ 0.81
NPHP3Q7Z494 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP3Q7Z494 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP3Q7Z494 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP3Q7Z494 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
NPHP3Q7Z494 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP3Q7Z494 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 USP4-203ENST00000415188 1454 ntTSL 3 BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 PCDH8P1-201ENST00000428983 2773 ntBASIC20.12■□□□□ 0.81
NPHP3Q7Z494 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 RN7SL396P-201ENST00000471086 295 ntBASIC20.12■□□□□ 0.81
NPHP3Q7Z494 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 NEU3-207ENST00000534628 746 ntTSL 2 BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 HKR1-225ENST00000592168 566 ntTSL 4 BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 AL022334.2-201ENST00000610000 484 ntBASIC20.12■□□□□ 0.81
NPHP3Q7Z494 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP3Q7Z494 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms