Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 BTNL10-201ENST00000595971 695 ntBASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 AL360270.3-201ENST00000609118 1348 ntBASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 TNRC18P2-201ENST00000417666 2714 ntBASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 AC008735.3-201ENST00000596646 500 ntBASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 AC233724.13-201ENST00000598383 410 ntBASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 AL022328.1-201ENST00000610050 478 ntBASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.04□□□□□ -0.16
NUP54Q7Z3B4 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms