Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 COG4-212ENST00000564653 590 ntTSL 5 BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 AL138918.1-201ENST00000568306 659 ntBASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 MIR4453-201ENST00000584019 89 ntBASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 KRT8P37-201ENST00000451609 1420 ntBASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 AC148477.4-201ENST00000613430 1793 ntBASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 AC020907.1-201ENST00000616460 1350 ntBASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 AC142381.1-201ENST00000426099 345 ntBASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 PHKG1P2-201ENST00000457537 863 ntBASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 LY6E-204ENST00000519546 971 ntTSL 2 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 USB1-203ENST00000539737 1212 ntTSL 2 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 NKG7-205ENST00000600427 520 ntTSL 3 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 MIR6869-201ENST00000619434 62 ntBASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 AC008267.7-201ENST00000624570 1194 ntBASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 GSN-215ENST00000545652 2428 ntTSL 2 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 CELP-203ENST00000624767 2414 ntTSL 5 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
PDLIM3Q53GG5 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
PDLIM3Q53GG5 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms