Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CNTNAP3P2-201ENST00000617175 3861 ntBASIC14.67□□□□□ -0.06
FOXA1P55317 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
FOXA1P55317 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA1P55317 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
FOXA1P55317 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.67□□□□□ -0.06
FOXA1P55317 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA1P55317 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
FOXA1P55317 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
FOXA1P55317 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.67□□□□□ -0.06
FOXA1P55317 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.67□□□□□ -0.06
FOXA1P55317 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.67□□□□□ -0.06
FOXA1P55317 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA1P55317 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.67□□□□□ -0.06
FOXA1P55317 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC14.67□□□□□ -0.06
FOXA1P55317 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA1P55317 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA1P55317 AC023310.3-201ENST00000557027 670 ntBASIC14.67□□□□□ -0.06
FOXA1P55317 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.67□□□□□ -0.06
FOXA1P55317 AC100756.1-201ENST00000562736 682 ntBASIC14.67□□□□□ -0.06
FOXA1P55317 AC138749.3-201ENST00000567691 622 ntBASIC14.67□□□□□ -0.06
FOXA1P55317 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.67□□□□□ -0.06
FOXA1P55317 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14.67□□□□□ -0.06
FOXA1P55317 WDR88-203ENST00000592765 651 ntTSL 5 BASIC14.67□□□□□ -0.06
FOXA1P55317 AL049840.4-201ENST00000602422 811 ntBASIC14.67□□□□□ -0.06
FOXA1P55317 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.67□□□□□ -0.06
FOXA1P55317 AL390955.2-201ENST00000603032 514 ntBASIC14.67□□□□□ -0.06
FOXA1P55317 AC116165.1-201ENST00000611806 668 ntBASIC14.67□□□□□ -0.06
FOXA1P55317 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC14.67□□□□□ -0.06
FOXA1P55317 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.67□□□□□ -0.06
FOXA1P55317 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA1P55317 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.67□□□□□ -0.06
FOXA1P55317 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA1P55317 AC022144.1-201ENST00000602255 1580 ntBASIC14.67□□□□□ -0.06
FOXA1P55317 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA1P55317 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA1P55317 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
FOXA1P55317 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.67□□□□□ -0.06
FOXA1P55317 OR2I1P-210ENST00000642037 4691 ntBASIC14.67□□□□□ -0.06
FOXA1P55317 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA1P55317 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA1P55317 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14.67□□□□□ -0.06
FOXA1P55317 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA1P55317 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA1P55317 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
FOXA1P55317 KRT18P28-201ENST00000453838 1332 ntBASIC14.66□□□□□ -0.06
FOXA1P55317 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
FOXA1P55317 KRT8P14-201ENST00000414254 1442 ntBASIC14.66□□□□□ -0.06
FOXA1P55317 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA1P55317 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
FOXA1P55317 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA1P55317 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC14.66□□□□□ -0.06
FOXA1P55317 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.66□□□□□ -0.06
FOXA1P55317 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA1P55317 NFIC-211ENST00000641145 8399 ntBASIC14.66□□□□□ -0.06
FOXA1P55317 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.66□□□□□ -0.06
FOXA1P55317 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA1P55317 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
FOXA1P55317 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA1P55317 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA1P55317 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
FOXA1P55317 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA1P55317 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA1P55317 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA1P55317 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA1P55317 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC14.66□□□□□ -0.06
FOXA1P55317 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA1P55317 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA1P55317 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA1P55317 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
FOXA1P55317 LBH-203ENST00000404397 543 ntTSL 4 BASIC14.66□□□□□ -0.06
FOXA1P55317 AC055876.3-201ENST00000431496 288 ntBASIC14.66□□□□□ -0.06
FOXA1P55317 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.66□□□□□ -0.06
FOXA1P55317 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.66□□□□□ -0.06
FOXA1P55317 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC14.66□□□□□ -0.06
FOXA1P55317 VDAC1P7-201ENST00000462417 847 ntBASIC14.66□□□□□ -0.06
FOXA1P55317 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA1P55317 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.66□□□□□ -0.06
FOXA1P55317 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.66□□□□□ -0.06
FOXA1P55317 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.66□□□□□ -0.06
FOXA1P55317 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.66□□□□□ -0.06
FOXA1P55317 RARRES2P5-201ENST00000564013 466 ntBASIC14.66□□□□□ -0.06
FOXA1P55317 AC138649.4-201ENST00000612222 287 ntBASIC14.66□□□□□ -0.06
FOXA1P55317 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.66□□□□□ -0.06
FOXA1P55317 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA1P55317 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.66□□□□□ -0.06
FOXA1P55317 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.66□□□□□ -0.06
FOXA1P55317 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.66□□□□□ -0.06
FOXA1P55317 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA1P55317 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
FOXA1P55317 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA1P55317 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.66□□□□□ -0.06
FOXA1P55317 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.66□□□□□ -0.06
FOXA1P55317 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA1P55317 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA1P55317 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA1P55317 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.66□□□□□ -0.06
FOXA1P55317 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14.66□□□□□ -0.06
FOXA1P55317 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14.66□□□□□ -0.06
FOXA1P55317 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.65□□□□□ -0.06
FOXA1P55317 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms