Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 FGD5P1-202ENST00000614866 2498 ntBASIC17.26■□□□□ 0.35
SMARCA1P28370 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC17.26■□□□□ 0.35
SMARCA1P28370 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
SMARCA1P28370 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC17.26■□□□□ 0.35
SMARCA1P28370 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC17.26■□□□□ 0.35
SMARCA1P28370 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
SMARCA1P28370 AC079178.1-201ENST00000420915 656 ntBASIC17.26■□□□□ 0.35
SMARCA1P28370 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
SMARCA1P28370 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC17.26■□□□□ 0.35
SMARCA1P28370 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC17.26■□□□□ 0.35
SMARCA1P28370 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC17.26■□□□□ 0.35
SMARCA1P28370 AL358472.3-201ENST00000608147 415 ntBASIC17.26■□□□□ 0.35
SMARCA1P28370 AC244157.2-201ENST00000616239 1006 ntBASIC17.26■□□□□ 0.35
SMARCA1P28370 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
SMARCA1P28370 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.26■□□□□ 0.35
SMARCA1P28370 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
SMARCA1P28370 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
SMARCA1P28370 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
SMARCA1P28370 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
SMARCA1P28370 AC009093.2-202ENST00000620513 2079 ntBASIC17.25■□□□□ 0.35
SMARCA1P28370 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
SMARCA1P28370 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SMARCA1P28370 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SMARCA1P28370 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
SMARCA1P28370 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SMARCA1P28370 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SMARCA1P28370 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC17.25■□□□□ 0.35
SMARCA1P28370 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SMARCA1P28370 AL023775.1-201ENST00000454907 1746 ntBASIC17.25■□□□□ 0.35
SMARCA1P28370 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC17.25■□□□□ 0.35
SMARCA1P28370 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SMARCA1P28370 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC17.25■□□□□ 0.35
SMARCA1P28370 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC17.25■□□□□ 0.35
SMARCA1P28370 AC010141.1-201ENST00000411585 623 ntBASIC17.25■□□□□ 0.35
SMARCA1P28370 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC17.25■□□□□ 0.35
SMARCA1P28370 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC17.25■□□□□ 0.35
SMARCA1P28370 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
SMARCA1P28370 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC17.25■□□□□ 0.35
SMARCA1P28370 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC17.25■□□□□ 0.35
SMARCA1P28370 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC17.25■□□□□ 0.35
SMARCA1P28370 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC17.25■□□□□ 0.35
SMARCA1P28370 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC17.25■□□□□ 0.35
SMARCA1P28370 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC17.25■□□□□ 0.35
SMARCA1P28370 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SMARCA1P28370 AP006547.1-201ENST00000563435 692 ntBASIC17.25■□□□□ 0.35
SMARCA1P28370 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC17.25■□□□□ 0.35
SMARCA1P28370 CYGB-203ENST00000589145 788 ntTSL 3 BASIC17.25■□□□□ 0.35
SMARCA1P28370 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SMARCA1P28370 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SMARCA1P28370 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SMARCA1P28370 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SMARCA1P28370 AC007292.2-201ENST00000593524 1812 ntBASIC17.25■□□□□ 0.35
SMARCA1P28370 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SMARCA1P28370 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SMARCA1P28370 AC015818.8-201ENST00000587907 1519 ntBASIC17.25■□□□□ 0.35
SMARCA1P28370 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SMARCA1P28370 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
SMARCA1P28370 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SMARCA1P28370 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC17.25■□□□□ 0.35
SMARCA1P28370 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC17.25■□□□□ 0.35
SMARCA1P28370 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.25■□□□□ 0.35
SMARCA1P28370 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SMARCA1P28370 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
SMARCA1P28370 KRT8P4-201ENST00000509735 1454 ntBASIC17.24■□□□□ 0.35
SMARCA1P28370 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC17.24■□□□□ 0.35
SMARCA1P28370 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC17.24■□□□□ 0.35
SMARCA1P28370 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMARCA1P28370 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SMARCA1P28370 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMARCA1P28370 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMARCA1P28370 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.24■□□□□ 0.35
SMARCA1P28370 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SMARCA1P28370 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SMARCA1P28370 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMARCA1P28370 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC17.24■□□□□ 0.35
SMARCA1P28370 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SMARCA1P28370 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
SMARCA1P28370 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SMARCA1P28370 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms